BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH10FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1703 981 0.0
>3x_Contig1703
Length = 17919
Score = 981 bits (495), Expect = 0.0
Identities = 561/579 (96%), Gaps = 3/579 (0%)
Strand = Plus / Minus
Query: 87 ttcattcatctccttttgtctttgtagagccaactgtaactctttttgctgttgcataat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2881 ttcattcatctccttttgtctttgtagagccaactgtaactctttttgctgttgcataat 2822
Query: 147 cgtctcgctcatctttatttctgcaggctgggaagcctgctgtgcttgcagtagtttttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2821 cgtctcgctcatctttatttctgcaggctgggaagcctgctgtgcttgcagtagtttttg 2762
Query: 207 ctgttcctgttgtattaaggcctgcttcttctcatctagattgattgtcatggaccctat 266
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2761 ctgttcctgttgcaggaaggcctgcttcttctcatctagattgattgtcatggaccctat 2702
Query: 267 gcttaatgatttattatgctgggcaaatccaaagatggcagtaccacttggctttttctt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 gcttaatgatttattatgctgggcaaatccaaagatggcagtaccacttggctttttctt 2642
Query: 327 gtgatttcctgcggccccaccacctggcataagttttcttggagtgattgatggtatttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2641 gtgatttcctgcggccccaccacctggcataagttttcttggagtgattgatggtatttc 2582
Query: 387 tgtatttacatttccaacaccgacagaagcatcattatcgtttactacattccaatctaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2581 tgtatttacatttccaacaccgacagaagcatcattatcgtttactacattccaatctaa 2522
Query: 447 tccgtttcccgggaacatctctagatcaagttttgaaagttcatccttaggaagtactgg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521 tccgtttcccgggaacatctctagatcaagttttgaaagttcatccttaggaagtactgg 2462
Query: 507 tatgtcaagatctcttatttc-tttgtgagaaattcttcaatatttatatccataacagg 565
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 tatgtcaagatctcttaattcttttgtgagaaattcttcaatatttatatccataacagg 2402
Query: 566 gtttgaagttcttaaaagccttatctggaagaagaatatcctgtcccccatttacagaac 625
| |||||||||| |||||||| |||||||||| || |||||||||||||| |||||||
Sbjct: 2401 g-ttgaagttctcaaaagcctcatctggaagaggataatcctgtcccccatagacagaac 2343
Query: 626 cccaattatgggaattgttttttg-attcagcaaatcca 663
|| ||||| |||||||||| ||| ||||||||||||||
Sbjct: 2342 ccagattattggaattgtttcttgaattcagcaaatcca 2304
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,806
Number of Sequences: 1807
Number of extensions: 15806
Number of successful extensions: 256
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)