BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH11FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1277 0.0
>3x_Contig1712
Length = 23668
Score = 1277 bits (644), Expect = 0.0
Identities = 739/760 (97%), Gaps = 8/760 (1%)
Strand = Plus / Plus
Query: 87 tgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgatgatc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11492 tgcaagaagtatttggaggcgtggttgtcaccaccttcggattgaataggttcgatgatc 11551
Query: 147 aaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaacaacgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11552 aaagcagcgactggagttggccaactcttgatcaaatcttcaacgatggccaaacaacgg 11611
Query: 207 tcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgggtat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11612 tcatcttccttcttattttcttcctcattttcggacaatgggtatttgtaaactgggtat 11671
Query: 267 tcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaacaagta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11672 tcaccatgaggccagttgaaagctgggaaatccaacttgtggattggcttggaacaagta 11731
Query: 327 gatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagccaat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11732 gatgaaccagaagcaaacaatctaccatggaaagctttcttgaaagaaaggacagccaat 11791
Query: 387 tgcggtgaacctggagaagtgttttccataacggagctgttttcttcttcagagaagtca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11792 tgcggtgaacctggagaagtgttttccataacggagctgttttcttcttcagagaagtca 11851
Query: 447 ataccgtgaccacctctttgtagttgacggtagtacatgaaagcggccttgaatgccaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11852 ataccgtgaccacctctttgtagttgacggtagtacatgaaagcggccttgaatgccaat 11911
Query: 507 tcattggcatcggcaccagaaagaccggaccaaattttattttgaccctttggagcaaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11912 tcattggcatcggcaccagaaagaccggaccaaattttattttgaccctttggagcaaat 11971
Query: 567 ttcaataattgcttcaagatatcttccaaatcagcacctggaaagttacccaaagctggt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11972 ttcaataattgcttcaagatatcttccaaatcagcacctggaaagttacccaaagctggt 12031
Query: 627 ctgtcaaccaaagctctaatcattttgtcggacttggcagcttcaatcaaagctgggttt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12032 ctgtcaaccaaagctctaatcattttgtcggacttggcagcttcaatcaaagctggg-tt 12090
Query: 687 gttgttacctagagcaatgggatgatattggggccgtaaacatccaagattttattatcg 746
||||| |||||||||||| ||| || ||| ||| ||||||||||||||| ||||||| ||
Sbjct: 12091 gttgtaacctagagcaat-ggaagaaatttggg-cgtaaacatccaagaatttattaccg 12148
Query: 747 ttcatcgtcaacgaatttatttaccaggaagacttggcctaattcagcaacgaaattagc 806
||| |||||||| || || |||||| ||||||||||| ||| ||||||||||||| ||
Sbjct: 12149 -tcaacgtcaacg-atgtagttacca-gaagacttggcataa-tcagcaacgaaataag- 12203
Query: 807 ctggcctagaatcgaaaacttctcctagagaaacgacctt 846
|||| ||||||||||||||||||||||||||| |||||||
Sbjct: 12204 ctggtctagaatcgaaaacttctcctagagaagcgacctt 12243
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6937
Number of Sequences: 1807
Number of extensions: 6937
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)