BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC35ZH11RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig429 1195 0.0
>3x_Contig429
Length = 1524
Score = 1195 bits (603), Expect = 0.0
Identities = 683/702 (97%), Gaps = 6/702 (0%)
Strand = Plus / Plus
Query: 48 cgatagtggagagtttgttgactcattaacttgat-ataacttccctgctgaatgatttc 106
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 604 cgatagtggagagtttgttgactcattaacttgatcataacttccctgctgaatgatttc 663
Query: 107 gccgttttccatgagagtaatggagtccgcaatggagagaacagtaattttatttgttgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gccgttttccatgagagtaatggagtccgcaatggagagaacagtaattttatttgttgc 723
Query: 167 taacacctttgttttggaatgcaacaaaccgtgtggacccaaaacgtgttcaatcaaatg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 taacacctttgttttggaatgcaacaaaccgtgtggacccaaaacgtgttcaatcaaatg 783
Query: 227 tttagcgacatgctcatctacagcagcgagaggatcgtccaataagtaagtatcagcacg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tttagcgacatgctcatctacagcagcgagaggatcgtccaataagtaagtatcagcacg 843
Query: 287 agaataaacggcacgggctaacgatagtcttgctttttggccaccagataaagaaatacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 agaataaacggcacgggctaacgatagtcttgctttttggccaccagataaagaaatacc 903
Query: 347 tttttcaccaactaaagtctggtcaccatctggcaacatagagagatcaatactcaaagc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tttttcaccaactaaagtctggtcaccatctggcaacatagagagatcaatactcaaagc 963
Query: 407 acacgcttttatagtcagctggtaaaattctggatcatacttgtgaccaaacaagatatt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 acacgcttttatagtcagctggtaaaattctggatcatacttgtgaccaaacaagatatt 1023
Query: 467 atctttaacagtaccattcataatccatggaacctgtgaaacgttggcgacgtcaccgtg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 atctttaacagtaccattcataatccatggaacctgtgaaacgttggcgacgtcaccgtg 1083
Query: 527 aacagttgcgaaacccttcactctaatcaaatctcctagtagactttgaataagtgcact 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aacagttgcgaaacccttcactctaatcaaatctcctagtagactttgaataagtgcact 1143
Query: 587 cttaccactacccactttcnccacgattcatgttagtttacccttttttggcaac-aaat 645
||||||||||||||||||| ||||||| |||||||||| | ||||| |||||||| ||||
Sbjct: 1144 cttaccactacccactttccccacgatacatgttagttca-cctttcttggcaacaaaat 1202
Query: 646 ttatg-ttttcaaagcaacttttatttttaggtttgcgttgccataagaaaattgccttt 704
||||| ||||||| ||||| ||||| || |||||||||||||||||||||| ||| | |
Sbjct: 1203 ttatgtttttcaaggcaac-tttatattcaggtttgcgttgccataagaaagttg-catc 1260
Query: 705 gttgacttttacacccttgtcaccaatattctttacttttgg 746
||||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 1261 gttgactttaacaccttcgtcaccaatattctttacttttgg 1302
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,211
Number of Sequences: 1807
Number of extensions: 13211
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)