BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA01FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1215 1316 0.0
>3x_Contig1215
Length = 7125
Score = 1316 bits (664), Expect = 0.0
Identities = 706/716 (98%), Gaps = 3/716 (0%)
Strand = Plus / Minus
Query: 87 taggagaatttctcttacgaggttgacctttttagcaaataaagactggatcaacagttg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 taggagaatttctcttacgaggttgacctttttagcaaataaagactggatcaacagttg 1227
Query: 147 tggatgatatattggcaatggaccattcaatacactagttaaatgcaaaatatcattcga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 tggatgatatattggcaatggaccattcaatacactagttaaatgcaaaatatcattcga 1167
Query: 207 taagatttttctatattcatattgagctgtacgtaaatttgtccttcaagtctaggcttt 266
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 taagatttttctagagcca-attgagctgtacgtaaatttgtccttcaagtctaggcttt 1108
Query: 267 tgtcctttatgaaaacttggttgccagtggctatgatgatagaaccattcttcaaccagg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 tgtcctttatgaaaacttggttgccagtggctatgatgatagaaccattcttcaaccagg 1048
Query: 327 tggagtcaccaatggcatgtgtagtgtgctgtgaaacgttgattttctcaattggcaagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 tggagtcaccaatggcatgtgtagtgtgctgtgaaacgttgattttctcaattggcaagt 988
Query: 387 aagcagggtttctgttcgtataatcgtatcttagttgcgtataaagaatgacataatttt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 aagcagggtttctgttcgtataatcgtatcttagttgcgtataaagaatgacataatttt 928
Query: 447 cgaaaccaatggcaacaatgctttgttcaaattcagtgcttgtccagtcaatatcaacaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 cgaaaccaatggcaacaatgctttgttcaaattcagtgcttgtccagtcaatatcaacaa 868
Query: 507 cctcgtcatcaaaggtagtttcgtactccaagacactccttctcaaatcccatagagtca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 cctcgtcatcaaaggtagtttcgtactccaagacactccttctcaaatcccatagagtca 808
Query: 567 tagtcgtacctttttcgtcaattacagatatcttatcatttgacgatcccgtaattttcg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tagtcgtacctttttcgtcaattacagatatcttatcatttgacgatcccgtaattttcg 748
Query: 627 aagcattagtaatattcgtaatggtttcataactcttctttcaccttattcccgactgat 686
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 747 aagcattagtaatattcgtaatggtttcataactcttcttccaccttatacccgactgat 688
Query: 687 cagcctgtgccttatatatccttattactccgaagtttggtaattgaggcattcaatgat 746
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 687 cagcctgtgccttatatatccttattactccg-agtttggtaattgaggcaatcaatgat 629
Query: 747 ctgtcactttgaaattgatatctcaccggatcaatcgcggaacacaaaataaaact 802
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 628 ctgtcactttgaaattgatatctcaccggatcaatcgcgg-acacaagataaaact 574
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6978
Number of Sequences: 1807
Number of extensions: 6978
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)