BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA01RM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 549 e-156
3x_Contig1636 137 5e-32
3x_Contig1800 135 2e-31
>3x_Contig1295
Length = 7117
Score = 549 bits (277), Expect = e-156
Identities = 277/277 (100%)
Strand = Plus / Minus
Query: 53 ggaatggttcctttgtttctctgtccttgacaaattctaaggaccagaatccaccaatac 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggaatggttcctttgtttctctgtccttgacaaattctaaggaccagaatccaccaatac 218
Query: 113 ctctgacatcaccgacgatgttatcgtaagctagcagagatttcttcaatttctgaccca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ctctgacatcaccgacgatgttatcgtaagctagcagagatttcttcaatttctgaccca 158
Query: 173 tcaagttacccttttcaaagatgtttttagttaaatcgttatccaagatcttcttttgca 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tcaagttacccttttcaaagatgtttttagttaaatcgttatccaagatcttcttttgca 98
Query: 233 caccaagggcaacggcacagttaaaaccgtgagatgcataagtgtgggaaccgatcatac 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 caccaagggcaacggcacagttaaaaccgtgagatgcataagtgtgggaaccgatcatac 38
Query: 293 agttcgaaccttcggcgtatgcttttttgatttttgg 329
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 agttcgaaccttcggcgtatgcttttttgatttttgg 1
>3x_Contig1636
Length = 15667
Score = 137 bits (69), Expect = 5e-32
Identities = 176/204 (86%), Gaps = 6/204 (2%)
Strand = Plus / Minus
Query: 470 acatgacttcatcgagcatgaacacaacgtcgtacttattacagatacggcggatacctg 529
||||||||| || ||| ||||| ||||||| |||||| | ||||||||||||||||||||
Sbjct: 15622 acatgactttatagaggatgaagacaacgttgtacttctcacagatacggcggatacctg 15563
Query: 530 atagatattccttttggtggtggagtagtaccctaaggaggaacctgncaatgttctaac 589
| ||||| ||| |||||||||||||||||| ||||||| |||||||| |||||| |||
Sbjct: 15562 acagata-tccctttggtggtggagtagta-cctaaggcggaacctggcaatgtctcaac 15505
Query: 590 gagaaccacagagattagtctttgggtcgttggcttaagatcaatttgttccaggctatt 649
||||| | ||||| |||||| |||||||||| | ||||||||| |||||| |||||| |
Sbjct: 15504 gagaaatagagaga-tagtctctgggtcgttgtc-taagatcaa-ttgttctaggcta-t 15449
Query: 650 gaattaatttgccacaatattctt 673
|||||||| || ||||||||||||
Sbjct: 15448 gaattaatatggcacaatattctt 15425
>3x_Contig1800
Length = 38778
Score = 135 bits (68), Expect = 2e-31
Identities = 122/140 (87%)
Strand = Plus / Minus
Query: 340 acaccggctatggtaacgtatccggaacccaaggtcttaccaacactttggatatctggg 399
||||| || ||||||||||| || || |||||||||||||| || |||||||||||||
Sbjct: 24837 acaccagcaatggtaacgtaaccagagcccaaggtcttaccgactgtttggatatctgga 24778
Query: 400 gcttcttcagctgtcaagaaattctcccaacagttcaacttaccgttagggttgcttcta 459
|| ||||| | || |||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct: 24777 gcatcttctggtgccaagaagttttcccagcagttcaacttaccgttagggttgcatcta 24718
Query: 460 ccagtaccacacatgacttc 479
|| |||||||||||||||||
Sbjct: 24717 ccggtaccacacatgacttc 24698
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,047
Number of Sequences: 1807
Number of extensions: 13047
Number of successful extensions: 144
Number of sequences better than 1.0e-20: 3
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)