BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA02FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig913 1477 0.0
>3x_Contig913
Length = 2857
Score = 1477 bits (745), Expect = 0.0
Identities = 825/841 (98%), Gaps = 8/841 (0%)
Strand = Plus / Minus
Query: 86 tagagggaacttttcttttcatcggtttgttctttgggctaaataaccaaacctaatcca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2026 tagagggaacttttcttttcatcggtttgttctttgggctaaataaccaaacctaatcca 1967
Query: 146 gtggcataataagtcccttccaagtaatacacttattgcatcagaaggcgaattgctcta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1966 gtggcataataagtcccttccaagtaatacacttattgcatcagaaggcgaattgctcta 1907
Query: 206 atattttttttgaaacctgaaatccttagtcacaggtattagaaactatgagtgattcgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1906 atattttttttgaaacctgaaatccttagtcacaggtattagaaactatgagtgattcgg 1847
Query: 266 gcagttttcctggttataaccagtttttagagatggtgaagacaactttggcgaaagtga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1846 gcagttttcctggttataaccagtttttagagatggtgaagacaactttggcgaaagtga 1787
Query: 326 taagaagttcggacaaagtaccgcaacatgtagcgttcattatggatggtaaccgtaggt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1786 taagaagttcggacaaagtaccgcaacatgtagcgttcattatggatggtaaccgtaggt 1727
Query: 386 ttgctaagaagaataacatggaggtcaatgagggacataatgctggatttgaaagtatgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1726 ttgctaagaagaataacatggaggtcaatgagggacataatgctggatttgaaagtatgt 1667
Query: 446 gtcgtatccttgaattgtgttatgaatcagggatgaaagttgctacagtatttgcgttct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1666 gtcgtatccttgaattgtgttatgaatcagggatgaaagttgctacagtatttgcgttct 1607
Query: 506 cgatagagaattttaagaggagtacgtttgaagtgaactggctgatggaattggcaaagg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1606 cgatagagaattttaagaggagtacgtttgaagtgaactggctgatggaattggcaaagg 1547
Query: 566 ataagattaagcagatatctcagcatggagaattagcggagcaatatggtattaaagttc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1546 ataagattaagcagatatctcagcatggagaattagcggagcaatatggtattaaagttc 1487
Query: 626 aaatcattggagataggtcgttattaccggctgacgttttgaaagaagtggagttagcgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1486 aaatcattggagataggtcgttattaccggctgacgttttgaaagaagtggagttagcgg 1427
Query: 686 aagatattactatgaataattcaagggcagtattgaacatatgcttcccatatacaggga 745
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 aagaaattactatgaataattcaagggcagtattgaacatatgcttcccatatacaggga 1367
Query: 746 gagaagagatcgtgcattcaatacagggaataatgaaagaaacgggcatgggggaaaatt 805
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1366 gagaagagatcgtgcattcaatacagggaataatgaaagaaacggccatggggg-aaatt 1308
Query: 806 gattatagagacattgacgaacaaacgatagtgggatcattttatttacacaagggtcag 865
||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||
Sbjct: 1307 gattatagagacattgacgaacaaacgatag-aggatca-tttatatacac-agggtcag 1251
Query: 866 ccaccctgtggaagcttttgat-ataacaagggggagtcaccagcctcaacgattttttg 924
||| ||||||| |||||||||| | ||||| | ||||||||||| |||| ||||||||||
Sbjct: 1250 cca-cctgtgg-agcttttgataagaacaa-gtggagtcaccaggctcagcgattttttg 1194
Query: 925 c 925
|
Sbjct: 1193 c 1193
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6259
Number of Sequences: 1807
Number of extensions: 6259
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)