BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZA02RM1.SCF screened BAC_end
         (945 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1650                                                        1231   0.0  

>3x_Contig1650 
          Length = 11257

 Score = 1231 bits (621), Expect = 0.0
 Identities = 733/765 (95%), Gaps = 4/765 (0%)
 Strand = Plus / Minus

                                                                        
Query: 46   cttcgggccaagtttttgaaacattagttctgagagagatcagctgaataggatcattaa 105
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 9617 cttcgggccaagtttttgaaacag-agttctgagagagatcagctgaataggatcattaa 9559

                                                                        
Query: 106  accgtttggggaggtttctgaaacaactttgaagctgtatgaggatgagaatggtgaaaa 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9558 accgtttggggaggtttctgaaacaactttgaagctgtatgaggatgagaatggtgaaaa 9499

                                                                        
Query: 166  tatgttacagcggttggattcccctcctattgcggaaagttctgtgaaatatggtctgca 225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 9498 tatgttacagcggttggattcccctcctattgcggaaagttctgtgaaatatggcaggca 9439

                                                                        
Query: 226  ttcgaagaatcattctattgggactgaatcgaatctgttctctgcttcgcaaaataatac 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9438 ttcgaagaatcattctattgggactgaatcgaatctgttctctgcttcgcaaaataatac 9379

                                                                        
Query: 286  gatggtttccttagtggaagaagaggaagagggaacagatagagtcaggaatggcattgc 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9378 gatggtttccttagtggaagaagaggaagagggaacagatagagtcaggaatggcattgc 9319

                                                                        
Query: 346  tgattatggtagaaatgtgcttgcgaaaaaatccagttcgaataatactttaggagataa 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9318 tgattatggtagaaatgtgcttgcgaaaaaatccagttcgaataatactttaggagataa 9259

                                                                        
Query: 406  gtctcatgatagcagttcaaagggacaatcccggtccaggtcaagatctcggtcgcgatc 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9258 gtctcatgatagcagttcaaagggacaatcccggtccaggtcaagatctcggtcgcgatc 9199

                                                                        
Query: 466  tcaatctattatcggcggcggtgcatgcgatacaaacagcttgaagcataaggtggtcag 525
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9198 tcaatctattatcggcggcggtgcaggcgatacaaacagcttgaagcataaggtggtcag 9139

                                                                        
Query: 526  cactttacatagaagatgaagcgaattgtctttgcatagcagcacgtctaatgcatctga 585
            |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 9138 cactttacatagaagaggaagcgaattgtctttgcaaagcagcacgtctaaggcatctga 9079

                                                                        
Query: 586  gatactgaaaaccgccaaaaagtcaagacttcggctcagccgattatttagagcttcaag 645
            || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9078 gaaactgaaaaccgccaaaaagtcaggacttcggctcagccgattatttagagcttcaag 9019

                                                                        
Query: 646  tacgtcttcttcattcaatgaacccactagtagttaagcccataagttcatttccagtag 705
            |||||||||||||| ||| ||||||||||||||| | ||| ||||||||||| |  ||||
Sbjct: 9018 tacgtcttcttcatccaaggaacccactagtagtaaggccaataagttcattccaggtag 8959

                                                                        
Query: 706  atcgagggctggttc-ttgaaaaaaacagtgtttgatttatatgaccattttcctgtacc 764
            ||||||||||||||| ||||||||| |||||||  ||||||||||||| |||||||||| 
Sbjct: 8958 atcgagggctggttctttgaaaaaaccagtgttgaatttatatgacca-tttcctgtaca 8900

                                                         
Query: 765  cgattgtaggtcttgattattttggacgacgaaaaccatgatgac 809
            ||| ||  |||||||| || ||||||||||||| || ||||||||
Sbjct: 8899 cgaatgagggtcttga-taatttggacgacgaagacgatgatgac 8856


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7680
Number of Sequences: 1807
Number of extensions: 7680
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)