BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA03FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1375 1417 0.0
>3x_Contig1375
Length = 6996
Score = 1417 bits (715), Expect = 0.0
Identities = 759/767 (98%), Gaps = 5/767 (0%)
Strand = Plus / Plus
Query: 92 gagctttcttgtttacttcagggtagtaatcatacccatttgaagcattccagacagtcg 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 gagctttcttgtttacttcagggtagtaatcatacccatttgaagcattccagacagtcg 989
Query: 152 tcactgaaaactaccaaaagcttatacactgttccggagctgaaaacagaggggacaagc 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tcactgaaaactaccaaaagcttatacactgttccggagctgaaaacagaggggacaagc 1049
Query: 212 cccacgagtagcgaaccgaaacagaagggaaatcgattccatttgactagctcttctcat 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 cccacgagtagcgaaccgaaacagaagggaaatcgattccatttgactagctcttctcat 1109
Query: 272 cagttgttaaataccatcagaaacaagaaacaatctcaggctcaatgtctagttctaact 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 cagttgttaaataccatcagaaacaagaaacaatctcaggctcaatgtctagttctaact 1169
Query: 332 gaccagaaagatagaagggtttctgcattgagcagagtatcctctggagaacccttgagg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 gaccagaaagatagaagggtttctgcattgagcagagtatcctctggagaacccttgagg 1229
Query: 392 aaaacattttcgaatcccatcaacagatacgaataccagaagacctacgcggtacgacca 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 aaaacattttcgaatcccatcaacagatacgaataccagaagacctacgcggtacgacca 1289
Query: 452 aagagttcaagtgctcgttgcataccgactgttaacaccaatagtaattcttcctcttcg 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 aagagttcaagtgctcgttgcataccgactgttaacaccaatagtaattcttcctcttcg 1349
Query: 512 tcacgaaccaattctccgttagaaccagttccagctgtgataactgacttgactgctgaa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1350 tcacgaaccaattctccgttagaaccagttccagctgtgataactgacttgactgctgaa 1409
Query: 572 gaaactttcaaaaagcctatcaacgagaactacacgctagagaataagttcgaaactaat 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 gaaactttcaaaaagcctatcaacgagaactacacgctagagaataagttcgaaactaat 1469
Query: 632 aaatcgattgagtccatgaacaacccgagtcccatcagttcaaaccaatcaccattcact 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1470 aaatcgattgagtccatgaacaacccgagtcccatcagttcaaaccaatcaccattcact 1529
Query: 692 aaaggaactgcagttgaacttgctaattccataagccgacgtgattctttgaccttgaaa 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1530 aaaggaactgcagttgaacttgctaattccataagccgacgtgattctttgaccttgaaa 1589
Query: 752 cagttcaattctgatttgacatacaatacgcccttcaat-aattatacttctagaacgca 810
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct: 1590 cagttcaattctgatttgacaaacaatacg-ccttcaataaattatacttctagaacgca 1648
Query: 811 atttgaattaga-catctgagagac-aatcagccg-aactcgaaact 854
||| ||||||| |||||||||||| ||||||||| |||||||||||
Sbjct: 1649 attgaaattagaccatctgagagacaaatcagccgaaactcgaaact 1695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6100
Number of Sequences: 1807
Number of extensions: 6100
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)