BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA03RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1287 0.0
>3x_Contig1729
Length = 15481
Score = 1287 bits (649), Expect = 0.0
Identities = 794/831 (95%), Gaps = 10/831 (1%)
Strand = Plus / Plus
Query: 46 taaggntagacatcatatattctc-acggactagaaaaataccagaggacttagatgatc 104
||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct: 9380 taaggttagacatcatagagtctccacggactagaaaaataccagaggacttagatgatc 9439
Query: 105 aaccttcatatcgagctctctgtattccttagggcagaacttaattcc-aacactgtcgt 163
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9440 aaccttcatatcgagctctctgtattccttagggcagaacttaattcccaacactgtcgt 9499
Query: 164 ggtatatagacggcaagtagcgaatacactagtagccaacactagattgctc-catcaat 222
|||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||
Sbjct: 9500 ggtatatagacggcaagtagcgaatacacttgtagccaacacttgatatatagcatcaat 9559
Query: 223 tatatcatatacgcctataaaccttggagaaagggtccacagtttcgtatatatccgcca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9560 tatatcatatacgcctataaaccttggagaaagggtccacagtttcgtatatatccgcca 9619
Query: 283 cactatcacccgacaaacattcttgcatctgggacccctgggccctctgccgttgagttg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9620 cactatcacccgacaaacattcttgcatctgggacccctgggccctctgccgttgagttg 9679
Query: 343 cgtactgtcttgtatctttttgtactcttcacatgaccgtttcaaggcttttcgatgtat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9680 cgtactgtcttgtatctttttgtactcttcacatgaccgtttcaaggcttttcgatgtat 9739
Query: 403 ttattttaagaaactactgtttcaggaaatgatatcgaaatctgaacgttttcctgtttt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9740 ttattttaagaaactactgtttcaggaaatgatatcgaaatctgaacgttttcctgtttt 9799
Query: 463 catagtacataaaaccagggaaactttttgtattgacatattggaatttgatctgagacg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9800 catagtacataaaaccagggaaactttttgtattgacatattggaatttgatctgagacg 9859
Query: 523 tggatgatacaaacaggaggcttangtgaataaagtttgaggataggttggggtaaacgt 582
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 9860 tggatgatacaaacaggaggcttaggtgaataaggtttgaggataggttggggtaaacgt 9919
Query: 583 tcagtaggattatcaaaggttgtgaaaccggncagttc-atatataaaaatgagctacan 641
|||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct: 9920 tcagtaggattatcaagggttgtgaaaccggcaggttcaatatataaaaatgagctacaa 9979
Query: 642 ttataacggncaaagttattaccgattcgacggtgatgaacatanggcatctcaccaagc 701
||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9980 ttataacggccaaggttattaccgattcgacggtgatgaacatagggcatctcaccaagc 10039
Query: 702 tcaag-aaatagttatcagatgtatgagcccatccg-agacgacggaaacgatgaaaatc 759
||||| |||||||||||||||||||||| ||||| | ||||||| |||||||||||||||
Sbjct: 10040 tcaagaaaatagttatcagatgtatgag-ccatctgaagacgacagaaacgatgaaaatc 10098
Query: 760 ataggtacagaactgctgcccgaacagatgagcagtataatggggtttgtgaaccattat 819
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 10099 ataggtacagaactgctgccggaacagatgagcagtataat-gggtttgtgaaccattat 10157
Query: 820 cccggaaatgggggaataatcgcaagccgggggaaatgtcccaataccagg 870
||||||||||| |||| ||||| |||| || || ||||||||||||||||
Sbjct: 10158 -ccggaaatgggtgaat-atcgccagcctggtgatatgtcccaataccagg 10206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5399
Number of Sequences: 1807
Number of extensions: 5399
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)