BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA04FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1138 0.0
>3x_Contig1749
Length = 22923
Score = 1138 bits (574), Expect = 0.0
Identities = 587/590 (99%), Gaps = 1/590 (0%)
Strand = Plus / Minus
Query: 86 ataatgcgttgttaactttattaaagtcagaacatccagaaaggaaacacaaat-caaat 144
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 590 ataatgcgttgttaactttattaaagtcagaacatccagaaaggaaacacaaatgcaaat 531
Query: 145 aagaagatcaagaaagattcccaacgcgctgaggaagacagtcctgaaaacgatggaatt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aagaagatcaagaaagattcccaacgcgctgaggaagacagtcctgaaaacgatggaatt 471
Query: 205 aatagtgaagatgaacatcataatattgaaaatgctttggatgatgtttctggaggagtt 264
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aatagtgaagatgaacaacaaaatattgaaaatgctttggatgatgtttctggaggagtt 411
Query: 265 gtggatgaggaagatatggaagattcattatctgacgttgatgagagcgaagatgaatcc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gtggatgaggaagatatggaagattcattatctgacgttgatgagagcgaagatgaatcc 351
Query: 325 gatccattcgaatcacatttcagcaaatatagtgaatcacgcttatatgctttcgataaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gatccattcgaatcacatttcagcaaatatagtgaatcacgcttatatgctttcgataaa 291
Query: 385 ggcttcaaagacaagactgtcaaatacaaatcttcgaaaacagatgtttcggaagaagaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggcttcaaagacaagactgtcaaatacaaatcttcgaaaacagatgtttcggaagaagaa 231
Query: 445 tctctaatatattccaaaccgtgtctagatgatgaggaagttttgcctgtgaaggggaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tctctaatatattccaaaccgtgtctagatgatgaggaagttttgcctgtgaaggggaaa 171
Query: 505 caaactttgagctcatatttcatcaaacagaagttgaaattagcaaacgatttccaaaac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 caaactttgagctcatatttcatcaaacagaagttgaaattagcaaacgatttccaaaac 111
Query: 565 aatggcttaccgttaactgaaattcaaaaggaacttgtagatccaatgtttcagtataaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aatggcttaccgttaactgaaattcaaaaggaacttgtagatccaatgtttcagtataaa 51
Query: 625 gatatgttatacgaatacgatgattatgctgatgaagatcaatacagaga 674
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gatatgttatacgaatacgatgattatgctgatgaagatcaatacagaga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8674
Number of Sequences: 1807
Number of extensions: 8674
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)