BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA04RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1473 1471 0.0
>3x_Contig1473
Length = 8041
Score = 1471 bits (742), Expect = 0.0
Identities = 798/813 (98%), Gaps = 3/813 (0%)
Strand = Plus / Plus
Query: 53 ataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaacaaataa 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaacaaataa 4524
Query: 113 gatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttgacatcgaa 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4525 gatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttgacatcgaa 4584
Query: 173 gaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaattgatacaa 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 gaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaattgatacaa 4644
Query: 233 cgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacaccaacacc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4645 cgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacaccaacacc 4704
Query: 293 accaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattgtatgaac 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 accaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattgtatgaac 4764
Query: 353 atcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgagatcactaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4765 atcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgagatcactaa 4824
Query: 413 ggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccaccgaccgc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4825 ggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccaccgaccgc 4884
Query: 473 acccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttcaacgatgc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4885 acccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttcaacgatgc 4944
Query: 533 cttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaatacctgc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4945 cttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaatacctgc 5004
Query: 593 aaatgatgcgaanaaaccaagcataataaccatatacgttttatttgagaagttcacttc 652
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5005 aaatgatgcgaaaaaaccaagcataataaccatatacgttttatttgagaagttcacttc 5064
Query: 653 acaaaattccattcttctcatacgttgtcttagcgtcttagt-actggagtatttgcaat 711
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5065 acaaaattccattcttctcatacgttgtcttagcgtcttagtaactggagtatttgcaat 5124
Query: 712 ttcatcttcgtacaccttaatctg-gttaagatttgatctttactgaaaaaataattgtc 770
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 5125 ttcatcttcgtacaccttaatctgtgttaagatttgatcttcactgaaaaaataattgtc 5184
Query: 771 ggcattcttaccgactttcacaccggcttaaatttcgtgttccgagttcaacaaaactcg 830
| ||| | |||||||||||||||||||| || ||||||| ||||| |||||| ||||||
Sbjct: 5185 gtcatcttcaccgactttcacaccggcttcaacttcgtgtaccgag-tcaacagaactcg 5243
Query: 831 tactctttagcaacccgaattctttttgctggt 863
||||||| ||||| |||||||||||||||||||
Sbjct: 5244 tactcttaagcaagccgaattctttttgctggt 5276
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7247
Number of Sequences: 1807
Number of extensions: 7247
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)