BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA05RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1238 1221 0.0
>3x_Contig1238
Length = 5289
Score = 1221 bits (616), Expect = 0.0
Identities = 701/723 (96%), Gaps = 5/723 (0%)
Strand = Plus / Plus
Query: 49 ggatgacgtctacgacgacaaattgtcacagatcgatatcgaggtgagaagtagaatata 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1483 ggatgacgtctacgacgacaaattgtcacagatcgatatcgaggtgagaagtagaatata 1542
Query: 109 ctggggctgttacattgccgatcacttgattgcagtattgtttggtcgttcaaattcttt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 ctggggctgttacattgccgatcacttgattgcagtattgtttggtcgttcaaattcttt 1602
Query: 169 gcgtgtgtcaaattcgacaattccagaaactgatgagctaccaaatattgatactggtat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 gcgtgtgtcaaattcgacaattccagaaactgatgagctaccaaatattgatactggtat 1662
Query: 229 cgaagattaccaatacgatcctacaattgtaacttctattgccaaacctttaaaaaagat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 cgaagattaccaatacgatcctacaattgtaacttctattgccaaacctttaaaaaagat 1722
Query: 289 tattgtgctatcaagaataactgaggttttcgccccgaagatattcatacatgccggttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 tattgtgctatcaagaataactgaggttttcgccccgaagatattcatacatgccggttc 1782
Query: 349 tttaacggaaagaagggaatatctaacaaaattcaacagtgaagtttcaaactggcgtaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 tttaacggaaagaagggaatatctaacaaaattcaacagtgaagtttcaaactggcgtaa 1842
Query: 409 gaatctacctgatgagtttgctctcactaaggcaacgctaatcaacttcgattacaatcc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 gaatctacctgatgagtttgctctcactaaggcaacgctaatcaacttcgattacaatcc 1902
Query: 469 tattttggctcatgtatggtatcattattttgttatccttttgtcctac-acanaccgtt 527
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 1903 tattttggctcatgtatggtatcattattttgttatccttttgtcctacaacaaaccgtt 1962
Query: 528 tattgattcacttcctgagagtaaacaggcgatagaaaacgcaattgaagagttgtactt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 tattgattcacttcctgagagtaaacaggcgatagaaaacgcaattgaagagttgtactt 2022
Query: 588 tttatttaagatcgtttatgagaaaattcaaaacattgcagaaaagtaacatttatatgc 647
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2023 ttta-ttaagatcgtttatgagaaaattcaaaacattccagaaaagtaacatttatatgc 2081
Query: 648 tggattcttcgattcttgcaattcaatgcatataaactggttcaattaa-aaagaccatt 706
|| |||||||||||||||||||||| |||||| |||||||||||||||| || ||| ||
Sbjct: 2082 tgtattcttcgattcttgcaattcagtgcataaaaactggttcaattaagaaggacaatc 2141
Query: 707 tttcgat-tttttggaatttttaagatcttcggccttttactacaagcta-ccaagaaat 764
||||||| || ||||||||| || ||||| || | || ||||| ||||| |||||||||
Sbjct: 2142 tttcgatattcttggaatttctaggatctccgtcattgaactacgagctagccaagaaat 2201
Query: 765 ttt 767
|||
Sbjct: 2202 ttt 2204
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8212
Number of Sequences: 1807
Number of extensions: 8212
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)