BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA06FM1.SCF screened BAC_end
(988 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1205 1063 0.0
>3x_Contig1205
Length = 5507
Score = 1063 bits (536), Expect = 0.0
Identities = 697/746 (93%), Gaps = 4/746 (0%)
Strand = Plus / Plus
Query: 86 gactggagtctgtgcacgaaccatgcaacatgcaaattcccaagtgaatcgattagagat 145
||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 3566 gactggagtctgttcacgaaccattcaacatgcagattcccaagtgaatcgattagagat 3625
Query: 146 tacgtccgataagaaatatttggctgctggtggtcatttacacgtccgtctatatgatat 205
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 3626 tacgtccgataagaaatatttggctgctgctggtcatttacacgtccgtctttatgatat 3685
Query: 206 acggtcgaataatttttttccggtgtcctctttcaaacgccataaagggaacgtaacgtc 265
||||||||||||| |||||||||||||||| || ||||||||||||||||||||||
Sbjct: 3686 acggtcgaataatccaaatccggtgtcctctttcgaaggccataaagggaacgtaacgtc 3745
Query: 266 gattgcatttcaacaagaaaatcgatggatggtatcgtctagtgaagatgggactattaa 325
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 gattgcatttcaacaggaaaatcgatggatggtatcgtctagtgaagatgggactattaa 3805
Query: 326 aggttgggatgtacggtccccatctgtgcaaaggaattacaagcataatgcacctgtcaa 385
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 ggtttgggatgtacggtccccatctgtgcaaaggaattacaagcataatgcacctgtcaa 3865
Query: 386 tgaagtagcgatacatccgaaccaaggggaattgatttcctgcgatcaggatgggaatat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 tgaagtagcgatacatccgaaccaaggggaattgatttcctgcgatcaggatgggaatat 3925
Query: 446 caggattggggatcttggtgaaaaccagggcacagaccagctgacaccataagataacac 505
||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 3926 caggatttgggatcttggtgaaaaccagtgcacaaaccagctgacaccagaagataacac 3985
Query: 506 gccattacagtcgttgtccgttgcaagcgacggatcgatgcttgttgcatgaaataacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3986 gccattacagtcgttgtccgttgcaagcgacggatcgatgcttgttgcaggaaataacaa 4045
Query: 566 aaggaactgttatgtatggaatatgcctcatcacacggatgctgncactgtggagcccgn 625
| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct: 4046 agggaactgttatgtatggaagatgcctcatcacacggatgcttccactttggagcccgt 4105
Query: 626 tactacaatcaaatcgcatactaaatatattaccatggtcctactatcggccggatgtag 685
|||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 4106 aactaaattcaaatcgcatactaaatatattaccagggtcctactatcgg-cggatgtaa 4164
Query: 686 aacatttagcaacatgtgcagcagaccatacagctagagtcttgaatatagaaggatatt 745
||||||||||||||||| |||||||||||||||||||||| | |||||||| |||||| |
Sbjct: 4165 aacatttagcaacatgttcagcagaccatacagctagagtatggaatatag-aggataat 4223
Query: 746 cttgaacctgcaaccactttagatggtcattacaaatgggtgaagggattgtccggtttt 805
|||||| || ||||||||||||||||||| | | ||||||| |||||||| | |||||
Sbjct: 4224 tttgaacttgaaaccactttagatggtcatcagagatgggtg-tgggattgtgc-gtttt 4281
Query: 806 cagcagacaatgcatacctaatcaca 831
||||||||| |||||||||| |||||
Sbjct: 4282 cagcagacagtgcatacctagtcaca 4307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5650
Number of Sequences: 1807
Number of extensions: 5650
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 988
length of database: 10,358,551
effective HSP length: 16
effective length of query: 972
effective length of database: 10,329,639
effective search space: 10040409108
effective search space used: 10040409108
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)