BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA07FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1384 0.0
>3x_Contig1761
Length = 23186
Score = 1384 bits (698), Expect = 0.0
Identities = 809/836 (96%), Gaps = 9/836 (1%)
Strand = Plus / Plus
Query: 88 tgagaaaaatagtaacaagtgaaaaaagttagttgatgtgatactcacttcagtattgcc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgagaaaaatagtaacaagtgaaaaaagttagttgatgtgatactcacttcagtattgcc 638
Query: 148 aaatagaataacttcacagtataaccatttgattgtttttgtatatataatagggcgttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaatagaataacttcacagtataaccatttgattgtttttgtatatataatagggcgttt 698
Query: 208 taatcccatgatctattctcataacttcgggtaattgcctaaaatttaagttatcagtat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 taatcccatgatctattctcataacttcgggtaattgcctaaaatttaagttatcagtat 758
Query: 268 agtaccgcattaggtacatagagctgtttcttcatgtttatgtttatgttttctgttccc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 agtaccgcattaggtacatagagctgtttcttcatgtttatgtttatgttttctgttccc 818
Query: 328 gtaaatcattttcctcggtatcgaagtatatttacataggagtgtaaaaacaagatcttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gtaaatcattttcctcggtatcgaagtatatttacataggagtgtaaaaacaagatcttc 878
Query: 388 aattcgaaaatattttgaacgttcgcccggcctgcgaaaatattctggaatatttaaaaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 aattcgaaaatattttgaacgttcgcccggcctgcgaaaatattctggaatatttaaaaa 938
Query: 448 aaaaggacacatacacatattgcctgcaaggacagccacgaacagcgggtttaacttatt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aaaaggacacatacacatattgcctgcaaggacagccacgaacagcgggtttaacttatt 998
Query: 508 atcatcctgacctcactctactaaaatatcaaacgttgaaacggtaagataatattcggg 567
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 999 atcatcctgacctcactctactaaaatatcaaacgttgaaacggtaagaaaatattcggg 1058
Query: 568 acgaaagataactaacccttttgcatttacaactttctagctatttattatttgttcttc 627
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 acgaaagaaaactaacccttttgcatttacaactttctagctatttattatttgttcttc 1118
Query: 628 ggtttctgcataatcatcatagttttgttccggcttgtgcgtgaagatacctttacaaca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 ggtttctgcataatcatcatagttttgttccggcttgtgcgtgaagatacctttacaaca 1178
Query: 688 agttaatttca-tttgtatgagtctgncggtttgtcatagacagtttgaaaaaacacata 746
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1179 agttaatttcattttgtatgagtctgtcggtttgtcatagacagtttgaaaaaacacata 1238
Query: 747 aaagtaaccgttcgggaaaattgggaaataaaagacgttccaacgaggattaagggcttt 806
||||||| |||||||| |||| |||||| |||||||| | ||||||||||||| ||||||
Sbjct: 1239 aaagtaa-cgttcggg-aaatagggaaa-aaaagacg-tacaacgaggattaa-ggcttt 1293
Query: 807 aaccattcctaaaaaataccatatttccaggaatcttgtccagggaaaaagctacccttc 866
|||||||| |||||||||||||||| | || |||| ||| ||| ||||||||||| |
Sbjct: 1294 aaccattcttaaaaaataccatattccaag--atctatgccaaggagaaagctaccctcc 1351
Query: 867 attctgcacctgattgatgaa-tccatgatgtggaacctgatgctgatgctgatgt 921
|||||||| |||||||||||| || |||||||||| |||||||||||||||||||
Sbjct: 1352 attctgcaactgattgatgaattcaatgatgtggacgctgatgctgatgctgatgt 1407
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7596
Number of Sequences: 1807
Number of extensions: 7596
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)