BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA07RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1366 0.0
>3x_Contig1771
Length = 25932
Score = 1366 bits (689), Expect = 0.0
Identities = 841/881 (95%), Gaps = 10/881 (1%)
Strand = Plus / Minus
Query: 44 cttgccgcattggaaaacaaagatgatcagaaacgtaagaggttttggaagttgataaaa 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14480 cttgccgcattggaaaacaaagatgatcagaaacgtaagaggttttggaagttgataaaa 14421
Query: 104 ctgaaggcggaaatggatacttatgagctagaagagggagaagagaccgccgcggttgag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14420 ctgaaggcggaaatggatacttatgagctagaagagggagaagagaccgccgcggttgag 14361
Query: 164 ctactatggaagactagaaggcacaaggggagtgtcagagggatgagtttcaataacgat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14360 ctactatggaagactagaaggcacaaggggagtgtcagagggatgagtttcaataacgat 14301
Query: 224 ggttcgaaattgtataccattggtatcgataacgtgttgaagaaagccaattcactaact 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14300 ggttcgaaattgtataccattggtatcgataacgtgttgaagaaagccaattcactaact 14241
Query: 284 ggtaaagtaatgaagaaggtcacattacccttgtctagtgagaaaaatcattacaccaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14240 ggtaaagtaatgaagaaggtcacattacccttgtctagtgagaaaaatcattacaccaag 14181
Query: 344 ttagtaacgtcaaagactcatccgttcttgttattgggtgatgaactcggtaatatccat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14180 ttagtaacgtcaaagactcatccgttcttgttattgggtgatgaactcggtaatatccat 14121
Query: 404 gtgctgaataatgacacattacagcttcaaaacacaatcaagagcatccataatggggat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14120 gtgctgaataatgacacattacagcttcaaaacacaatcaagagcatccataatggggat 14061
Query: 464 gccatcaatgacattttccaatttgtcgggaaatctgtatacaagtttatttccttgggg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14060 gccatcaatgacattttccaatttgtcgggaaatctgtatacaagtttatttccttgggg 14001
Query: 524 cagactacattagcgtactgggatagtagagaatcgaatgaaagtgatgccagcatccca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14000 cagactacattagcgtactgggatagtagagaatcgaatgaaagtgatgccagcatccca 13941
Query: 584 gctgatganttagatgctaagagaanagtgtacgtgagtgatgatcaagaagacgaaatg 643
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 13940 gctgatgatttagatgctaagagaaaagtgtacgtgagtgatgatcaagaagacgaaatg 13881
Query: 644 atctgcggctctttcgt-aatccagaagatggagacattctagtatgttgtatgggtgga 702
||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||
Sbjct: 13880 atctgcggctctttcgtaaatccagaggatggagacattctagtatgtggtatgggt-ga 13822
Query: 703 aggtgtctttactgtttggnaaaccctaaaaag-atgacttgggtagatcaagttactag 761
||||||||| ||||||||| || ||||| ||| ||||||| ||||||||||||||||||
Sbjct: 13821 aggtgtcttaactgtttggaaa--cctaagaagaatgactt-ggtagatcaagttactag 13765
Query: 762 aaattcccatttgcaaaaatgaaaacgtgggattgcgtaatctcgtcttttcaggatgaa 821
||||||||||||||||||||| | ||| ||||||||| ||||||||||| ||||||||
Sbjct: 13764 -aattcccatttgcaaaaatgagagcgt-ggattgcgttatctcgtctttccaggatgat 13707
Query: 822 taccggggctactgggggttgctccaatgggaaccgtttccaaagttaccgggaagctgg 881
|| | | ||||| | |||||||||||||| || ||||| |||||||| || |||||| |
Sbjct: 13706 aactgtgtctact-gtggttgctccaatggtaa-cgtttacaaagttaacgtgaagctag 13649
Query: 882 ggaaagttcttgaaattccaaaccccagctttttcgatgaa 922
||||||| ||||||| | ||| | ||||| | ||||||||
Sbjct: 13648 ggaaagtcattgaaatccgaaaacacagctctatcgatgaa 13608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6686
Number of Sequences: 1807
Number of extensions: 6686
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)