BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA08FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1394 0.0
>3x_Contig1730
Length = 17223
Score = 1394 bits (703), Expect = 0.0
Identities = 724/731 (99%)
Strand = Plus / Minus
Query: 89 tacttgcatatgaatggaaactagcaggtaaaatcatagatatgcaattactgccccaaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1533 tacttgcatatgaatggaaactagcaggtaaaatcatagatatgcaattactgccccaaa 1474
Query: 149 ttggatcgcctcttaagatgcttgcaatactttcgtcgaaatccaaagtatcgttggtaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1473 ttggatcgcctcttaagatgcttgcaatactttcgtcgaaatccaaagtatcgttggtaa 1414
Query: 209 ggtttgacccattggcagagagtcttgaaacactaagtctgcattattatcacgacaaat 268
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1413 ggtttgacccagtggcagagagtcttgaaacactaagtctgcattattatcacgacaaat 1354
Query: 269 ttgtcaatttaagcacttcttctttgaagacggagtccattatggcagtggatccattgt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1353 ttgtcaatttaagcacttcttctttgaagacggagtccattatggcagtggatccattgt 1294
Query: 329 ttagatgtcttctggtttttaatgaagatgttttagctatattgccattgaaactgaaca 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1293 ttagatgtcttctggtttttaatgaagatgttttagctatattgccattgaaactgaaca 1234
Query: 389 cagaagatatggaaattgatgaggatgagaacggaataaaagatccaatggctaaacgct 448
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1233 cagaagatatggaaattgatgaggatgagaacggaataaaagagccaatggctaaacgct 1174
Query: 449 taaaaaggaaccaaggaatcacatccgatagtataataatgccaatttctagccttcaca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 taaaaaggaaccaaggaatcacatccgatagtataataatgccaatttctagccttcaca 1114
Query: 509 agagtctcaagcatgtctatgatataaaatggttaaataatttcagcaagccaactgtgg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 agagtctcaagcatgtctatgatataaaatggttaaataatttcagcaagccaactgtgg 1054
Query: 569 gaatattatatcaaccggtacttgcgtggtgtggaaatgaaaaagtacttggaaatacta 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 gaatattatatcaaccggtacttgcgtggtgtggaaatgaaaaagtacttggaaatacta 994
Query: 629 tgaggtacatggttttgagtttagatgtcgaagatgaaaaaaccaccgtgattgctgagc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 tgaggtacatggttttgagtttagatgtcgaagatgaaaaaaccaccgtgattgctgagc 934
Query: 689 ttgcagatcttccgaacgacctgcacaccttggttccactgaagaggggatatgtgttga 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 ttgcagatcttccgaacgacctgcacaccttggttccactgaagaggggatatgtgttga 874
Query: 749 ttggtgtcaatgaattattatttatcaatgcatctggtgcactacaattctgcatacgat 808
||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct: 873 ttggtgtcaatgaattattatatatcagtgcatctggtgcactacaatcgtgcatacgat 814
Query: 809 tggacacattt 819
|| ||||||||
Sbjct: 813 tgaacacattt 803
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7576
Number of Sequences: 1807
Number of extensions: 7576
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)