BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA08RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1787 1263 0.0
>3x_Contig1787
Length = 34189
Score = 1263 bits (637), Expect = 0.0
Identities = 727/749 (97%), Gaps = 6/749 (0%)
Strand = Plus / Plus
Query: 48 cttctttctcttt-aaggatatatcttttatgtcatatttttttatgaattgagtccaac 106
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25792 cttctttctctttcaaggatatatcttttatgtcatatttttttatgaattgagtccaac 25851
Query: 107 agaatcgtttagcccaatcaatatgccattgaagctgcaccttgatgccattgtcgattg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25852 agaatcgtttagcccaatcaatatgccattgaagctgcaccttgatgccattgtcgattg 25911
Query: 167 tggtgggatgagaattgctgatcttatgacttcttggcaaaactaaaaaatgtttttcat 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 25912 tggtgggatgagaattgctgatcttatgacttcttggcaaaactaaaaaatgttcttcag 25971
Query: 227 atttagggaacttatcatgtataatggtcgctatgtcgtcaaagtagagtacttcaggca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25972 atttagggaacttatcatgtataatggtcgctatgtcgtcaaagtagagtacttcaggca 26031
Query: 287 atcgttctggacacaaaacgtacggtctgagacctatgctgaacgagttctccctgtttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26032 atcgttctggacacaaaacgtacggtctgagacctatgctgaacgagttctccctgtttt 26091
Query: 347 tctcgtcaccatgggcgtttggtacataagtgggtttgaaaatctgcagatactgattat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26092 tctcgtcaccatgggcgtttggtacataagtgggtttgaaaatctgcagatactgattat 26151
Query: 407 aagtcattccagttgtgatttgtggatggattttgttcatatggaaaccaattaaatctc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26152 aagtcattccagttgtgatttgtggatggattttgttcatatggaaaccaattaaatctc 26211
Query: 467 tgttcttgccgatgaactgctttcggcaatgtttacagtacacaatatctttgttggcgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26212 tgttcttgccgatgaactgctttcggcaatgtttacagtacacaatatctttgttggcgt 26271
Query: 527 cttcatttaatttgaataaatgagtcgtaaaccccgatttatctgagatagtccatttga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 26272 cttcatttaatttgaataaatgagtcgtaaaccccgatttatctgagatagtcca-ttga 26330
Query: 587 tcg-ctggacttttctttcattctat-acatatattggaccggactcatccatttgttat 644
||| ||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 26331 tcgcctggactttccttccattctataacatatattggaccgcactcatccatttgttat 26390
Query: 645 gaactagtaacagttatcttatcattttagcattactattatcataaattgttgaggtct 704
||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct: 26391 gaactagtaacagttatctaatcatttagtcattactataatcataaattgttgaggtct 26450
Query: 705 gttactacaagtaatgacctttaccttttaaatttcctttcaaaataaacatgttgttaa 764
||||||||||||||||||||||| | | || |||||| |||||||||||||||| | |||
Sbjct: 26451 gttactacaagtaatgaccttta-cgtatagatttccattcaaaataaacatgtag-taa 26508
Query: 765 aaaaaaaagtcagataaaagggcgatgaa 793
|||||||||||||||||||| ||||||||
Sbjct: 26509 aaaaaaaagtcagataaaagtgcgatgaa 26537
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9534
Number of Sequences: 1807
Number of extensions: 9534
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)