BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA10FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1168 0.0
>3x_Contig1761
Length = 23186
Score = 1168 bits (589), Expect = 0.0
Identities = 648/664 (97%), Gaps = 3/664 (0%)
Strand = Plus / Minus
Query: 89 acatgaactgatgacggacggattttgtaaccagacgcaaacatgttttcttcaattcat 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13072 acatgaactgatgacggacggattttgtaaccagacgcaaacatgttttcttcaattcat 13013
Query: 149 ctttgatttcttggctgacatcagagaataccttgtttagagcagagtcaaaagcatctc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13012 ctttgatttcttggctgacatcagagaataccttgtttagagcagagtcaaaagcatctc 12953
Query: 209 ttctgaaagagttccattccgaagcgatttctgaggtgttacttgtttcgagagatgttt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12952 ttctgaaagagttccattccgaagcgatttctgaggtgttacttgtttcgagagatgttt 12893
Query: 269 ggaaaagatgattagtatattgatcttgagaagacacatgaatctgaatgttcattaaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12892 ggaaaagatgattagtatattgatcttgagaagacacatgaatctgaatgttcattaaat 12833
Query: 329 gcaaagattcggcttctaacatccgtaagaagacatctggctctgagcggaaatgggctg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12832 gcaaagattcggcttctaacatccgtaagaagacatctggctctgagcggaaatgggctg 12773
Query: 389 gagttctaccaagagcatatttgatatcttcgtatggggaacctctttgaatctcttttc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12772 gagttctaccaagagcatatttgatatcttcgtatggggaacctctttgaatctcttttc 12713
Query: 449 taccttttgaagtcaatgcaacatccacaatatagtacttgtaaaagtcatctctgatct 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12712 taccttttgaagtcaatgcaacatccacaatatagtacttgtaaaagtcatctctgatct 12653
Query: 509 tttgccttaccttaggatttttagaaagctctagtgcgtagtatttttcgattgtttcta 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12652 tttgccttaccttaggatttttagaaagctctagtgcgtagtatttttcgattgtttcta 12593
Query: 569 acgccaatttatgattctgggagaaaatctgaagatccttggcctctgggtcttct-aaa 627
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 12592 acgccaatttaggattctgggagaaaatctgaagatccttggcctctggtccttctaaaa 12533
Query: 628 tatttgctactgaatcagtaagtttcattgaagggtgatcaacaacccnttgatgttgat 687
|||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||
Sbjct: 12532 tatttgctactgaatcagtaggtttcaatgaagggtgatcaacaaccggatgaagttgat 12473
Query: 688 gctcagcactgatttttttacccaacttgttctggagtaatcccagtttcatttgatagc 747
||||||||||||| |||| | ||||||||||||| |||||||||||| ||| ||||||||
Sbjct: 12472 gctcagcactgatattttca-ccaacttgttctgcagtaatcccagtatca-ttgatagc 12415
Query: 748 ttgg 751
||||
Sbjct: 12414 ttgg 12411
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7763
Number of Sequences: 1807
Number of extensions: 7763
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)