BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA10RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 839 0.0
>3x_Contig1361
Length = 8765
Score = 839 bits (423), Expect = 0.0
Identities = 500/523 (95%), Gaps = 2/523 (0%)
Strand = Plus / Plus
Query: 40 atgtattgtgtttactcattattcgttatgcaaaa-ctacttctccggaaacgacacgat 98
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 8198 atgtattgtgtttactcattattcgttatgcaaaagctacttctccggaaacgacacgat 8257
Query: 99 taaggaggactcctatccttgaaggacgaaagatggaagctaatatcatttccaatcaat 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8258 taaggaggactcctatccttgaaggacgaaagatggaagctaatatcatttccaatcaat 8317
Query: 159 ccaattggaatgcgaggcaaatgccgaacgtaagcagagcaaccaagaaattgaagaagc 218
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8318 ccaattggaatgcgatgcaaatgccgaacgtaagcagagcaaccaagaaattgaagaagc 8377
Query: 219 tactagacccgtatgtggatcatatgaaacagtcatacgaactagatcaaaacaatcaca 278
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 8378 tactagacccgtatgtggatcatatgacacagtcatacgaactagatcaaaacaatctca 8437
Query: 279 tctatgtggatcctattttgactaaacgctccatttatagtccagcaaatttctctgtgc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8438 tctatgtggatcctattttgactaaacgctccatttatagtccagcaaatttctctgtgc 8497
Query: 339 ccggaagatatgagattttacaagtgttagggaaaggctcatatggcacggtggtgtctg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8498 ccggaagatatgagattttacaagtgttagggaaaggctcatatggcacggtggtgtctg 8557
Query: 399 ctgtggataaagggaatccaacccacgaagtccaacttgccatcaaaaaagtgacgagca 458
|||||||||||||||||||| |||||||||||| | ||||||| || |||||||||||||
Sbjct: 8558 ctgtggataaagggaatccatcccacgaagtcctatttgccattaataaagtgacgagca 8617
Query: 459 tttttactagagaaatcttgttgaagcgggccattagagaattgaagtttatgagttatt 518
|||| ||| ||||||| |||||| |||||||||||| ||||||||||||| |||
Sbjct: 8618 aggggactatagacatcttgtggaagcgttccattagagaatggaagtttatgagtgatt 8677
Query: 519 tta-aggacacagaaatattgtttcgttgattgatctcgaaat 560
||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 8678 ttacagggcacagaaatattgtttcgttgattgatctcgaaat 8720
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9415
Number of Sequences: 1807
Number of extensions: 9415
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)