BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA11FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 291 1e-78
>3x_Contig1801
Length = 57606
Score = 291 bits (147), Expect = 1e-78
Identities = 177/183 (96%), Gaps = 3/183 (1%)
Strand = Plus / Minus
Query: 89 cattaggtgtggatcacagtatcgagaataatttacaaacagagactaatagattgtcca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41524 cattaggtgtggatcacagtatcgagaataatttacaaacagagactaatagattgtcca 41465
Query: 149 agactttgactaagttttgggaacaagtgagtttagaagaaacccccgaaaatgttacca 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41464 agactttgactaagttttgggaacaagtgagtttagaagaaacccccgaaaatgttacca 41405
Query: 209 tttaaattgtattttaagncctttgcgtactcctttggggaacccttttatctttaccac 268
|||||||| ||| |||| |||||||||||||||||||||||||| |||| |||||||||
Sbjct: 41404 -ttaaattggattctaag-cctttgcgtactcctttggggaaccc-tttaactttaccac 41348
Query: 269 aat 271
|||
Sbjct: 41347 aat 41345
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,704
Number of Sequences: 1807
Number of extensions: 17704
Number of successful extensions: 287
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)