BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA11RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig226 1273 0.0
>3x_Contig226
Length = 1863
Score = 1273 bits (642), Expect = 0.0
Identities = 699/714 (97%), Gaps = 3/714 (0%)
Strand = Plus / Plus
Query: 46 ctttgaccggtggtagaggtaaatgtcatttcgataacggtatgcaatctggtatccata 105
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctttgaccggtggtagaggtaaaggtcatttcgataacggtatgcaatctggtatccata 388
Query: 106 tgatcgattctgtgcaagatgctactgaagtcagtggtaagatgcttggttaccatttga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgatcgattctgtgcaagatgctactgaagtcagtggtaagatgcttggttaccatttga 448
Query: 166 tcaccaagcaatctggtattaagggtaagttagtgtccggtgtttacattgtctaaagag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 449 tcaccaagcaatctggtattaagggtaagttagtgtccggtgtttacattgtcgaaagag 508
Query: 226 tgaatgccaaacacgaagcttatttgtctatcttgatggacagaaagactaagaagccat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgaatgccaaacacgaagcttatttgtctatcttgatggacagaaagactaagaagccat 568
Query: 286 tgatcatttgctctagtgaaggtggtatgaatatcgaagatgtggcaaagaccaacccag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgatcatttgctctagtgaaggtggtatgaatatcgaagatgtggcaaagaccaacccag 628
Query: 346 atgctatcaagaagttctacgtcgaagattccgttggattgaccccagaaactgctgctg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgctatcaagaagttctacgtcgaagattccgttggattgaccccagaaactgctgctg 688
Query: 406 agattgctgcctccttgggtttctccaaggaagccgaagctgatgctaaggatgcagtct 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agattgctgcctccttgggtttctccaaggaagccgaagctgatgctaaggatgcagtct 748
Query: 466 tgaagttatataagatcttcaaggaaaaggatgctactcaaatcgaaattaacccattga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgaagttatataagatcttcaaggaaaaggatgctactcaaatcgaaattaacccattga 808
Query: 526 gtgaagttcttgaccaggataagaaggtcatgtgtatggatgccaagttcggtttcgatg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gtgaagttcttgaccaggataagaaggtcatgtgtatggatgccaagttcggtttcgatg 868
Query: 586 acaatgcctccttcagac-aaaagacgtgtactcatggagagatttgactcaagatgatc 644
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 869 acaatgcctccttcagacaaaaagacgtgtactcatggagagatttgactcaagaagatc 928
Query: 645 cagatgaagttaccggcaagaaagagtgacttgaactttggcaagtttaaaggttatatc 704
||||||||||||||| |||| ||||||||||||||||||| |||||| || ||| |||||
Sbjct: 929 cagatgaagttaccgccaag-aagagtgacttgaactttgtcaagttaaagggtaatatc 987
Query: 705 ggttggttggtcaaccgtggcggtttatccatggccaccatgggatgtcattaa 758
||||| ||||||||| ||| ||||||| ||||||||||||| ||||||||||||
Sbjct: 988 ggttgtttggtcaacggtgccggtttagccatggccaccat-ggatgtcattaa 1040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6638
Number of Sequences: 1807
Number of extensions: 6638
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)