BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA12FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 504 e-142
3x_Contig1167 349 6e-96
>3x_Contig985
Length = 5529
Score = 504 bits (254), Expect = e-142
Identities = 422/478 (88%)
Strand = Plus / Plus
Query: 84 atgcaagacttccgttgcaattcttggcacctgaacttcatttcaatgatgcaacagaag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4968 atgcaagacttccgttgcaattcttggcacctgaacttcatttcaatgatgcaacagaag 5027
Query: 144 ccttcgaatttctaacggaacttgagctaatccagtttatggttgtgccggaaagcgacc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5028 ccttcgaatttctaacggaacttgagctaatccagtttatggttgtgccggaaagcgacc 5087
Query: 204 ccaacgagatctatttttattgtaaaagctgccgttctacaatcattaaacatttcggcg 263
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5088 ccaacgagatctatctcgattgtaaaagctgccgttctacaatcattaaacatttcggcg 5147
Query: 264 atgctagaagaattgacatcaagggacaaatttaagttgtttcgaagaatatctcgtatg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5148 atgctagaagaattgacatcaagggacaaatttaagttgtttcgaagaatatctcgtatg 5207
Query: 324 attcggctaaataccattcactactacatatgtttatattaatgacgttcaaaccatggt 383
||| ||||||||| ||| | || || |||||||||||||||||| ||| ||| |||||
Sbjct: 5208 attaggctaaataaaattaaataataaatatgtttatattaatgaagttaaaaaaatggt 5267
Query: 384 tcacatgaacctcggcagtttattaattgcaaagtcatattgatgctaatctagagatgg 443
| | ||| | || || |||||||||||| ||||| |||||||| |||| ||||||||
Sbjct: 5268 taaaatgcaactaggacgtttattaattgaaaagtactattgatgataataaagagatgg 5327
Query: 444 ccctagccctaacaatgagaactgcaatttcatagactcggaagcattaccgtgatacca 503
||| || |||| ||| || ||||| ||||| | ||||| |||| |||||| |
Sbjct: 5328 aaatagaaaaaaaaatgcgaaatgaaatttaatagaataggaagaattaaagtgataaaa 5387
Query: 504 ttcgaatctctgttttaccagtggttcagtcaataaatctgaattgggactaatttta 561
|| |||| | ||||||| ||||||| ||| ||||||| ||||| |||| ||||||||
Sbjct: 5388 ttagaatatatgttttaaaagtggttaagtaaataaatatgaatagggaataatttta 5445
>3x_Contig1167
Length = 4801
Score = 349 bits (176), Expect = 6e-96
Identities = 303/340 (89%), Gaps = 4/340 (1%)
Strand = Plus / Plus
Query: 455 acaatgagaactgcaatttcatagactcggaagcattacc-gtgataccattcgaatctc 513
||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct: 150 acaatgagaactgcaatcccacagactcggaagcattacccgtgataccattcgaatctc 209
Query: 514 tgttttaccagtggttcagtcaataaatctgaattgggactaattttacccaagcatctt 573
||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||
Sbjct: 210 tgtcttaccagtggttcagtcaataaatcttaatcgggactaattttacccaattatctt 269
Query: 574 ggtccttgtttactccttccatcaagttcgtatagtaagccgtcctttttcatgaatgtt 633
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 270 ggtcctgttttactccttccatcaagttcgtatagtaagccgtccttttcaatgaatgtt 329
Query: 634 atgaaaagtaacttaacatccttttctgca-aaagagcagcagtatcaccttgctgacta 692
|||||| |||||| |||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct: 330 atgaaatgtaactcaacatcctcttctgcagaaggagcagcagtatcaccttgctgacta 389
Query: 693 ttttccgtttttatctggctatttgattccaa-aagtcattgactgcttgggcattagat 751
||||| | | ||||| |||| ||||| |||| ||||||| |||||| | | ||| |||
Sbjct: 390 ttttcgttatatatctcgctaattgataccaagaagtcatcgactgcatcgtcatcagaa 449
Query: 752 tactgaccat-aattgccgggttttttgtcaaaatttgtt 790
|||||||||| | |||||||||| | |||||||| |||||
Sbjct: 450 tactgaccatcacttgccgggttctctgtcaaaaattgtt 489
Score = 232 bits (117), Expect = 1e-60
Identities = 123/125 (98%)
Strand = Plus / Plus
Query: 314 atctcgtatgattcggctaaataccattcactactacatatgtttatattaatgacgttc 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 atctcgtatgattcggctaaataccattcactactacatatgtttatattaatgacgttc 66
Query: 374 aaaccatggttcacatgaacctcggcagtttattaattgcaaagtcatattgatgctaat 433
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 aaaccatggttcacatgaacctcggcagtttattaattgttaagtcatattgatgctaat 126
Query: 434 ctaga 438
|||||
Sbjct: 127 ctaga 131
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7784
Number of Sequences: 1807
Number of extensions: 7784
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)