BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZA12RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1099 1181 0.0
>3x_Contig1099
Length = 3902
Score = 1181 bits (596), Expect = 0.0
Identities = 683/706 (96%), Gaps = 5/706 (0%)
Strand = Plus / Plus
Query: 52 tatataggataattgaccgtcaaatcgttactttctgcaagtatatgagtaccaatattc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 tatataggataattgaccgtcaaatcgttactttctgcaagtatatgagtaccaatattc 1593
Query: 112 tttcagtgcaaggcagtaccgttttaagtatgctttgagcaaacgctgcttgcttatgtt 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 tttcagtgcaaggcagtaccgttttaagtatgctttgagcaaacgctgcttgcttatgtt 1653
Query: 172 cacttcaccagtaaatatgtgtcctagatcatctaagacgaatgttgatttcttaatatc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 cacttcaccagtaaatatgtgtcctagatcatctaagacgaatgttgatttcttaatatc 1713
Query: 232 gatttcatcaaaatacttagctaaccatataatggtattcactgtttacgattcactcat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 gatttcatcaaaatacttagctaaccatataatggtattcactgtttacgattcactcat 1773
Query: 292 cgtggatatgttaaaagctggtataaaattgagcaggcggtgcatagaagggaatccgaa 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 cgtggatatgttaaaagctggtataaaattgagcaggcggtgcatagaagggaatccgaa 1833
Query: 352 ctgcgaacttcggcaataaaacgagatggacgttgacttcaaccgttcccaggaaactca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 ctgcgaacttcggcaataaaacgagatggacgttgacttcaaccgttcccaggaaactca 1893
Query: 412 cctgaagttcggacaaatcttgaaggaatatcatgcaagaagtgttgagcgatgaagcgt 471
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1894 cctgaagttcggacaaatcttgaaggaatatcaggcaag-agtgttgagcgatgaagcgt 1952
Query: 472 ctcttgacccgttctctatagtgcaagacttcangtccattgccggagtagatgcattgg 531
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct: 1953 ctcttgacccgttctctatagtgcaagacttcaggtccattgccggagaagaggcattgg 2012
Query: 532 aaattgcagaatctggagaggagaatgattatgaacagttccagatctgggaactagatg 591
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct: 2013 aaattgcagaatctggagaggagaatgataatgaacagttccagaactgggaactagagg 2072
Query: 592 ccaagtttttgggatcttgttggcttgttagtgg-attttgaacatcagagacagttgac 650
||||| |||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 2073 ccaag-ttttgggatcttgttggcttgttagtggaatatcgaacatcagagacagttgac 2131
Query: 651 naagattttaacgtttattcatacatttcgaacgtagtattccaaaaacagttgttgcat 710
||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2132 aaagatattaacgttcattcatacaattcgaacgtagtattccaaaaacagttgttgcaa 2191
Query: 711 ttcaataa-gggatttttgaaatctggtt-ataaagtcatggcttg 754
| ||||| ||||| | |||||||||||| ||||||||||||||||
Sbjct: 2192 tcaaataaggggatatatgaaatctggttaataaagtcatggcttg 2237
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6111
Number of Sequences: 1807
Number of extensions: 6111
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)