BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB01RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 946 0.0
>3x_Contig1664
Length = 15696
Score = 946 bits (477), Expect = 0.0
Identities = 537/553 (97%), Gaps = 3/553 (0%)
Strand = Plus / Plus
Query: 42 aagcttatttcctctttttgtggatgtttatcgcacattcaaaattcctgcaggaatttt 101
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 12962 aagcttatttcctctttttgtggatgtctatcgcacattcaaaattcctgcaggaatttt 13021
Query: 102 gaatgtgcacgacataatgttgcgctatacaacaagaacaccttcaatccgattagaacg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13022 gaatgtgcacgacataatgttgcgctatacaacaagaacaccttcaatccgattagaacg 13081
Query: 162 aatatacattcgattgataaactgcgtgctcttttctaatgagatgagggatggatagct 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13082 aatatacattcgattgataaactgcgtgctcttttctaatgagatgagggatggatagct 13141
Query: 222 gtagcatctcgtaagtaaagcgatttttcctttcttttcttggtttgacgattgggttca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13142 gtagcatctcgtaagtaaagcgatttttcctttcttttcttggtttgacgattgggttca 13201
Query: 282 ctgtccggcagcttaaatcctttttattcatttattcccgccagagcaacgttattccgc 341
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 13202 ctgtccggcagcttaaatcctttttatccatttattcccgccagagcaacgttattccgc 13261
Query: 342 tgttgtgagactgctcaagatttacaagagtcaagaattgcgagtaaaagggtgcgacaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13262 tgttgtgagactgctcaagatttacaagagtcaagaattgcgagtaaaagggtgcgacaa 13321
Query: 402 gaaatgattggattcatgaaaacctgttccatcccagcacgaaattgccgtgtccatttc 461
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13322 gaaatgattggaatcatgaaaacctgttccatcccagcacgaaattgccgtgtcca-ttc 13380
Query: 462 ttttgtttcggaaatgcatctcatcttactcattacctcatcatacatatttttccgcac 521
|| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 13381 cttcgtttcggaaatgcatctcatcttactcattacttcatcatacata-ttttccgcac 13439
Query: 522 ctttacggttaagtaatgaccattggattttatatgttgatgtgatttattggccagaca 581
|||||||||||||||||||| || | | |||||||||||||||||||||||| ||||||
Sbjct: 13440 ctttacggttaagtaatgactatagta-tttatatgttgatgtgatttattgcacagaca 13498
Query: 582 cgaaaggactttg 594
|||| | ||||||
Sbjct: 13499 cgaaggaactttg 13511
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,567
Number of Sequences: 1807
Number of extensions: 25567
Number of successful extensions: 3163
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)