BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB02FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1568 0.0
>3x_Contig1728
Length = 20685
Score = 1568 bits (791), Expect = 0.0
Identities = 800/803 (99%)
Strand = Plus / Minus
Query: 88 gtttatatattgacggaggattatacaagtttgtttatggtgcaacagaagtggttacga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12062 gtttatatattgacggaggattatacaagtttgtttatggtgcaacagaagtggttacga 12003
Query: 148 aatcacgcataattaaagctcttttatattcaagcaaggagtttagacgtcaatttttgc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12002 aatcacgcataattaaagctcttttatattcaagcaaggagtttagacgtcaatttttgc 11943
Query: 208 aggtgatgctccaagaagaccctaacatgttaaaagcgaagaaaaaaactgatggaccag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11942 aggtgatgctccaagaagaccctaacatgttaaaagcgaagaaaaaaactgatggaccag 11883
Query: 268 aagaaattcaacgattacaaaaatggcaactgtgccttctatcgatcaaatcagtcgata 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11882 aagaaattcaacgattacaaaaatggcaactgtgccttctatcgatcaaatcagtcgata 11823
Query: 328 aagatgttctaacaggtttgtgttctgattatatcattccttctcttgtggaagaatcgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11822 aagatgttctaacaggtttgtgttctgattatatcattccttctcttgtggaagaatcgt 11763
Query: 388 ctccgttagtaagagtttattcagaatggttcattgcatatgacctatgggttacagcga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11762 ctccgttagtaagagtttattcagaatggttcattgcatatgacctatgggttacagcga 11703
Query: 448 cagataatcataaaaatccaaatgaggactttctgttcaaacttttagaagacacctctc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11702 cagataatcataaaaatccaaatgaggactttctgttcaaacttttagaagacacctctc 11643
Query: 508 gtcctgttttacaagcaagtgttgaacgtttgttattcttatctttgaaggcagcgaagg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11642 gtcctgttttacaagcaagtgttgaacgtttgttattcttatctttgaaggcagcgaagg 11583
Query: 568 agacaggtcattttttcaggccaatggaaagatttgtcgcacaactgataactaattgct 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11582 agacaggtcattttttcaggccaatggaaagatttgtcgcacaactgataactaattgct 11523
Query: 628 cctcaaacaaaccattaattagacatttctctaattccctcattcttttgttttggccaa 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11522 cctcaaacaaaccattaattagacatttctctaattccctcattcttttgttttggccaa 11463
Query: 688 cctttgaagatgacatcaaagataatattttgcgatccattatttctaagctatacagcg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11462 cctttgaagatgacatcaaagataatattttgcgatccattatttctaagctatacagcg 11403
Query: 748 atgctaagaagatccaagtacaatgtcaattcagagccggtgacgcatacacttggagca 807
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 11402 atgctaagaagatccaagtacaaggtcaattcagagccggtgacgcaaacacttggagca 11343
Query: 808 tcaataacgaccttaagttaacaagtatatttggcggcgtattattgaaaattatggatc 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11342 tcaataacgaccttaagttaacaagtatatttggcggcgtattattgaaaattatggatc 11283
Query: 868 ataaagttccatatttaaatagt 890
|||||||||||||| ||||||||
Sbjct: 11282 ataaagttccatatataaatagt 11260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7041
Number of Sequences: 1807
Number of extensions: 7041
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)