BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig985 1350 0.0
>3x_Contig985
Length = 5529
Score = 1350 bits (681), Expect = 0.0
Identities = 747/765 (97%), Gaps = 4/765 (0%)
Strand = Plus / Plus
Query: 41 gcttgtttctcgtgaaatcaggcttttactcaaggcagctattgcgaaaggagctctgca 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3696 gcttgtttctcgtgaaatcaggcttttactcaaggcagctattgcgaaaggagctctgca 3755
Query: 101 taaaaatgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3756 taaaaatgattgggatcagcagcacttaacaagagtattttcagcgaaaactaacggaaa 3815
Query: 161 tccaataaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattat 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3816 tccaataaactcccaggaacggctatgctgtttcttatcccctgaagaaaaaagaattat 3875
Query: 221 catagatggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaa 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3876 catagatggcatcccatatgaacaacttggcattgaacgtccaaatgtatcaacatctaa 3935
Query: 281 agacaatactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgca 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3936 agacaatactaacaattaccaagtgatagatcctacttcaatagtaacagttgaaacgca 3995
Query: 341 gtcaaaggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3996 gtcaaaggtaccaccgccgcctcctccaattgattctaggccaaccccaccatgggctca 4055
Query: 401 gaatgttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4056 gaatgttagaacagcagatcctttgctaaatcagcagatgaatcccaaagaatcaccggt 4115
Query: 461 accgtcagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4116 accgtcagtatcgttagaatctcgaatctcaaacttgaacgcaccaagcccttcccccgt 4175
Query: 521 acccaagaaaatagctgctcaagatgagaaaagcangaggcttnataggctaaagagatt 580
||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 4176 acccaagaaaatagctgctcaagatgagaaaagcaggaggctggaaaggctaaagagatt 4235
Query: 581 tgctagtcctgaaccactaacgtcaacctctaaaagagtgaagatagacgacgacgacag 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4236 tgctagtcctgaaccactaacgtcaacctctaaaagagtgaagatagacgacgacgacag 4295
Query: 641 ctattccgatctcaacgccatcactaacanagcttataaatttgacaagaacaagccgat 700
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4296 ctattccgatctcaacgccatcactaacaaagcttataaatttgacaagaacaagccgat 4355
Query: 701 tgttggggccatgtcaagtggtagagaaaaaatatttaagacttactgctggaacaanat 760
|| |||||| |||||||||| |||||||||||||||||||||||||| || |||| | ||
Sbjct: 4356 tg-tggggcaatgtcaagtgttagagaaaaaatatttaagacttacttct-gaaccagat 4413
Query: 761 ccggccaaagtaccccccgttggccatttttaattaaagctcttg 805
||||| |||||| | ||||||| ||| | ||||||||||||||||
Sbjct: 4414 ccggcaaaagta-cgcccgttgtcca-tgttaattaaagctcttg 4456
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6066
Number of Sequences: 1807
Number of extensions: 6066
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)