BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB04FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1757 1094 0.0
>3x_Contig1757
Length = 24754
Score = 1094 bits (552), Expect = 0.0
Identities = 652/679 (96%), Gaps = 5/679 (0%)
Strand = Plus / Plus
Query: 88 cccttacagaaacgaattaccgaaaaacctttgttcccgtttgtttctactttgttacgc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15258 cccttacagaaacgaattaccgaaaaacctttgttcccgtttgtttctactttgttacgc 15317
Query: 148 aaatcctgtatgtttccagatggaaactcggaccatttcgcgtacagaacgttattacca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15318 aaatcctgtatgtttccagatggaaactcggaccatttcgcgtacagaacgttattacca 15377
Query: 208 agttattccgctcgggtctctccagttcgaaattcgtcgttcccaaccatacaatttctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15378 agttattccgctcgggtctctccagttcgaaattcgtcgttcccaaccatacaatttctc 15437
Query: 268 ctttgtttcgcatatgtttcctacagccattcggtttacattgaccatttccgttaagta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15438 ctttgtttcgcatatgtttcctacagccattcggtttacattgaccatttccgttaagta 15497
Query: 328 attgtctgttttgcccaacagcgtccgactcgaaaaattatgcgatgtatgggtgcggaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15498 attgtctgttttgcccaacagcgtccgactcgaaaaattatgcgatgtatgggtgcggaa 15557
Query: 388 gatcacggcagtagtctggcatcttcggaaaaagactgcccacacgtgaccgagtcggaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15558 gatcacggcagtagtctggcatcttcggaaaaagactgcccacacgtgaccgagtcggaa 15617
Query: 448 cattgcgtgccagaacgtttcataacgagtcggtttttttcggagataatgcgtcagata 507
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 15618 cattgcgtgccagaacgtttcataacgagtcggtttttttcggagaaaatgcgtcagaaa 15677
Query: 508 cgggatgggaattggaaacaagtgcgatacgacgtagaactgatctacaatatttatctt 567
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 15678 cgggatgggaattggaaacaagtgcgaaacgacgtagaactgatctacaatatttatctt 15737
Query: 568 ttttcatcgtctgaatgctaaccatgtttgtaagttcttttt-accacgatgttctaccg 626
|||||||||||||||||||||| ||||||||||||||||||| || ||||||| |||||
Sbjct: 15738 ttttcatcgtctgaatgctaacaatgtttgtaagttctttttaacaacgatgtcataccg 15797
Query: 627 ttaagtttcagataaaacagaataaaggggagggcctttggtttgaagggttgggaataa 686
|||||| |||||||||||||||||||||||||| |||||||||| | |||| |||||||
Sbjct: 15798 ataagttacagataaaacagaataaaggggagggactttggtttgta-ggtttggaataa 15856
Query: 687 ccttaaacttcattaaactttttaccctgncttttaatttccccaaacttaaaaaagggt 746
|||||||||||| ||||| | ||| ||| | ||||| |||||||||||| || ||| ||
Sbjct: 15857 -cttaaacttcataaaactatatacactggc-tttaagttccccaaactt-aagaagtgt 15913
Query: 747 ggctttaattgactcttta 765
||||| ||||||||||||
Sbjct: 15914 tgctttcattgactcttta 15932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7398
Number of Sequences: 1807
Number of extensions: 7398
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)