BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB04RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1104 1219 0.0
>3x_Contig1104
Length = 4895
Score = 1219 bits (615), Expect = 0.0
Identities = 738/771 (95%), Gaps = 6/771 (0%)
Strand = Plus / Plus
Query: 42 aagctttttgcaaagtttacctctagaggtctaacttagagcacagtaaaccgcaaatta 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aagctttttgcaaagtttacctctagaggtctaacttagagcacagtaaaccgcaaatta 347
Query: 102 gagataggcacaatagcgtacgggagtgcaaacttcatccaatataaaacagaaacaaaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gagataggcacaatagcgtacgggagtgcaaacttcatccaatataaaacagaaacaaaa 407
Query: 162 agaagatgctcggaggtggcattgatgatacaatgattgctcatggctcatcgatttatc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agaagatgctcggaggtggcattgatgatacaatgattgctcatggctcatcgatttatc 467
Query: 222 tagacgataacggtgcctaccccaaacgacttaggacatctttgtcaaaaattatggaca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tagacgataacggtgcctaccccaaacgacttaggacatctttgtcaaaaattatggaca 527
Query: 282 agcaactggattacaataatagtatggcaaacgtgataccgataggtccaaggtctaggt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agcaactggattacaataatagtatggcaaacgtgataccgataggtccaaggtctaggt 587
Query: 342 ctaggtcgaactcaattggaggagataccaatcccactcctatttcatcaatgctaagat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctaggtcgaactcaattggaggagataccaatcccactcctatttcatcaatgctaagat 647
Query: 402 ctacttctccaattaggatatctccaatacctggtcctgtgaaagtgcaaccgcctaaga 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctacttctccaattaggatatctccaatacctggtcctgtgaaagtgcaaccgcctaaga 707
Query: 462 tgtacaagaaagaataccttttgaagaacaacaacagtaatcaagtgataaaaaatgttc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtacaagaaagaataccttttgaagaacaacaacagtaatcaagtgataaaaaatgttc 767
Query: 522 caatagttggcacaaaaatgaatgccaatgggaatgataacttaaatcgggggtcccatg 581
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct: 768 caatagttggcacaaaaatgaatgccaatggaaatgataacttaaatcgtgggtccaatg 827
Query: 582 gccaacctgctcttgggctta-aagaagaatgtctagtacatcccaattaaattatacca 640
|| ||||||||||||||| || |||| ||||||||||||||||||| |||| | ||||||
Sbjct: 828 gcaaacctgctcttgggcatagaagaggaatgtctagtacatcccagttaagtaatacca 887
Query: 641 caaaataccttgagcttgaacctccaaaatta-gtgaatgggtcccatccttaaattc-t 698
|||||||| ||||||| |||||||||||| || |||| || ||||||||| | |||| |
Sbjct: 888 caaaatacgttgagctagaacctccaaaaataggtgataggttcccatcctcagattcat 947
Query: 699 ttactt-aaattcaccgactggaacacttgatcttgaactt-aaaagctacctgataagg 756
||||| || ||||||||||| ||||||||||||||||||| ||| |||| ||||| |||
Sbjct: 948 atacttcaagttcaccgactgtaacacttgatcttgaacttcaaatgctagctgatgagg 1007
Query: 757 aggtccaaaa-gggttaaatgataacaatggggctgtgtataacaaaagaa 806
|||| ||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct: 1008 aggtacaaaatggattaaatgataacaatggggctgtcaataacaaaagaa 1058
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,464
Number of Sequences: 1807
Number of extensions: 13464
Number of successful extensions: 124
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)