BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB05FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig257 1370 0.0
>3x_Contig257
Length = 1630
Score = 1370 bits (691), Expect = 0.0
Identities = 766/790 (96%), Gaps = 1/790 (0%)
Strand = Plus / Minus
Query: 102 gagtttatgagttccgcagttcttgaggaagaaatatgggaacactattcgcaacaatag 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 gagtttatgagttccgcagttcttgaggaagaaatatgggaacactattcgcaacaatag 1571
Query: 162 aggtattgtaccattagctttaaaagtgaaaaggtatagagggaatccgataatttgaag 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 aggtattgtaccattagctttaaaagtgaaaaggtatagagggaatccgataatttgaag 1511
Query: 222 ctgtttttcggtcgagattgaaagcatgccctttaaagtttctgcatacacatctaacgc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 ctgtttttcggtcgagattgaaagcatgccctttaaagtttctgcatacacatctaacgc 1451
Query: 282 tttagtattggatatatttagaatctttcttagcagttcttctgaaaacagagtgcgtag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 tttagtattggatatatttagaatctttcttagcagttcttctgaaaacagagtgcgtag 1391
Query: 342 ttgccaaagcccaactttgaatagacacttcaccggattgaagacataactgtgtaaagt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 ttgccaaagcccaactttgaatagacacttcaccggattgaagacataactgtgtaaagt 1331
Query: 402 aagtacagtagcagaatatcttgttacttttcgacaaaaggaaaacaatctcaagggcca 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1330 aagtacagtagcagaatatcttgttacttttcgacaaaaggaaaacaatctcaagggcca 1271
Query: 462 agccggtgatctgtactgtaacgctgatgtattttttaacatcttttgtttacattgtgg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 agccggtgatctgtactgtaacgctgatgtattttttaacatcttttgtttacattgtgg 1211
Query: 522 gcatggtggtatgtcttctggaagtcctctccatagttcgtcatacgagatagaagtatc 581
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1210 gcatggtggtatgtcttctggaagtcctctccatagttcgtcatacgagaaagaagtatc 1151
Query: 582 tggagcatttagatgggctagggccctgatcaaaagatcaccaacacaaataaaactggc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 tggagcatttagatgggctagggccctgatcaaaagatcaccaacacaaataaaactggc 1091
Query: 642 ccatgtttgacccactaacggtatctnctgcacagtttcagcatatccaattactctccc 701
|||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct: 1090 ccatgtttgacccactaacggtatctcctgcacagtttcagcaaacccaattactctccc 1031
Query: 702 catgtccctatggctatcaatgaggtagcatagtctttcgagatatttcctggggagaat 761
||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct: 1030 catgtccctatggctatcaatgaggtagcatagtc-ttcgagatatttcctgtgatgaat 972
Query: 762 taatcttggatgtatcataaagatagtaacctccttactttgacttatttagatcggata 821
|||||||| ||||||||||| |||||||| ||| ||| ||||||||||||||| |||
Sbjct: 971 taatcttgtatgtatcataagtatagtaactccctagcttcgacttatttagatcgaata 912
Query: 822 ttcatcctattagactttttcggtgtacctgtaagttacaaccgcattggggtaccatcc 881
| ||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct: 911 tccatcctattagacattttctgtgtacctgtaagttacaaccgcattggtgtacgatcc 852
Query: 882 aattgtcgtt 891
| | ||||||
Sbjct: 851 agtcgtcgtt 842
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5665
Number of Sequences: 1807
Number of extensions: 5665
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)