BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB05RM1.SCF screened BAC_end
(881 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 985 0.0
>3x_Contig1738
Length = 21411
Score = 985 bits (497), Expect = 0.0
Identities = 558/576 (96%), Gaps = 2/576 (0%)
Strand = Plus / Minus
Query: 48 cattccgatacatattactctgtctgtgacgggtacgagcaaagtaatttcgacatttca 107
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5669 cattccgatacatagtactctgtctgtgacgggtacgagcaaagtaatttcgacatttca 5610
Query: 108 tctactaaagcatcaacggtagggaaattatatttctcaaaaccaattggaccctcagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5609 tctactaaagcatcaacggtagggaaattatatttctcaaaaccaattggaccctcagaa 5550
Query: 168 ggcacaacaataactttgagttccttccttggtagagctaaaatgaaattggtgatagaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5549 ggcacaacaataactttgagttccttccttggtagagctaaaatgaaattggtgatagaa 5490
Query: 228 ccggtaataaattcgggagggactaaataggacaactgtttcaactctgttattttgtcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5489 ccggtaataaattcgggagggactaaataggacaactgtttcaactctgttattttgtcc 5430
Query: 288 gaatttactaatattgttatatccttaatgtctctaagcaattgtgctaaatttctagtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5429 gaatttactaatattgttatatccttaatgtctctaagcaattgtgctaaatttctagtc 5370
Query: 348 atgaaattcgttacaatggctgggtatttcacttcattctcatcgattattgcgatcaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5369 atgaaattcgttacaatggctgggtatttcacttcattctcatcgattattgcgatcaaa 5310
Query: 408 gtatcctctaacctccataaattgtaatgtatcacgaactgttccgtagaatttatcata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5309 gtatcctctaacctccataaattgtaatgtatcacgaactgttccgtagaatttatcata 5250
Query: 468 tgtttcttctgtgtcatacatttcaagtacgggtttcattgattcccattcgntcatgtt 527
|| ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 5249 tg-ttcttctgtgtcatacattccaggtacgggtttcattgattcccattcgttcatgtt 5191
Query: 528 tgatagggtacctgagatgatccttatttgtaccaaattgttattacttctaggaattac 587
||||||||||||||||||||| | ||| |||||||||||| || |||| |||||| ||
Sbjct: 5190 tgatagggtacctgagatgatacctatatgtaccaaattgataatactcttaggaagtag 5131
Query: 588 ccactttaagga-gtaggcaggacattgcattgatt 622
|||||||||||| ||||||| |||| |||| |||||
Sbjct: 5130 ccactttaaggatgtaggcaagacaatgcaatgatt 5095
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7462
Number of Sequences: 1807
Number of extensions: 7462
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 881
length of database: 10,358,551
effective HSP length: 16
effective length of query: 865
effective length of database: 10,329,639
effective search space: 8935137735
effective search space used: 8935137735
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)