BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC36ZB06FM1.SCF screened BAC_end (950 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig410 1065 0.0 >3x_Contig410 Length = 1641 Score = 1065 bits (537), Expect = 0.0 Identities = 677/709 (95%), Gaps = 11/709 (1%) Strand = Plus / Minus Query: 91 tgatcagggtacggcacagtttatgattcacaggagattcattgaaccgattcaaacaat 150 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 886 tgatcagggtacggcacagtttaggattcacaggagattcattgaaccgattcaaacaat 827 Query: 151 cctgatagatcgccattttgtctggcaaggacccactgtgtgggtcctcagacttcttat 210 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 826 cctgatagatcgccattttgtctggcaaggacccactgtgtgggtc-tcagacttcttat 768 Query: 211 aagtttgtgcagacatgcaattggcagtgctaggataccttcaaatgacgtactaacctt 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 767 aagtttgtgcagacatgcaattggcagtgctaggataccttcaaatgacgtactaacctt 708 Query: 271 tagtagccaattttgagcctattaacctcgtgttttatccaattctttttgccgtgtggt 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 707 tagtagccaattttgagcctattaacctcgtgttttatccaattctttttgccgtgtggt 648 Query: 331 atggtatatatttatattcataatgttttcagtttgcaaatcggtagaagtcctttggaa 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 647 atggtatatatttatattcataatgttttcagtttgcaaatcggtagaagtcctttggaa 588 Query: 391 tgaaaaaaaaagtgaagcgggtgtgtgaaagtgagggtaacacttgttttttaattatga 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 587 tgaaaaaaaaagtgaagcgggtgtgtgaaagtgagggtaacacttgttttttaattatga 528 Query: 451 tatatatgtatatatatatatatatatggatatggagatatatatgatatagcaggcaag 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 527 tatatatgtatatatatatatatatatggatatggagatatatatgatatagcaggcaag 468 Query: 511 atcactgctgctgttcatctagagtcaggagtagttgtgcaagacatctcttggtaccta 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 467 atcactgctgctgttcatctagagtcaggagtagttgtgcaagacatctcttggtaccta 408 Query: 571 catcgtcctgtagtgcttcattggaagtgttatcttcttatttgttgc-gcataac-tgt 628 ||||||||||||||||||||||| | |||||||| ||||| ||||||| ||| ||| ||| Sbjct: 407 catcgtcctgtagtgcttcattgaaggtgttatc-tcttagttgttgcggcaaaacttgt 349 Query: 629 ttcaacaatctcttggc-tcttaaatatccgataatctta-gtagcatcttac-acatgt 685 ||||||||||| |||| ||| || ||||||||||||||| |||||||||||| |||||| Sbjct: 348 ttcaacaatcttctggcttctaaattatccgataatcttaggtagcatcttacaacatgt 289 Query: 686 ttcatttattttcccggcaccggttggttggaacatgtgcttaaaactattttggccaaa 745 |||| | || ||||||||||| ||| ||||| ||||||||||||| || ||| | ||| Sbjct: 288 ttcaataatcttcccggcacctgtt-gttgggacatgtgcttaaacata-gttgccaaaa 231 Query: 746 cttgtgacaaccgggtagaaccgttctggggttcgggcatacgaactgg 794 |||||||| |||| ||||||||||||||||| ||| ||||||||||||| Sbjct: 230 cttgtgac-accgcgtagaaccgttctgggg-tcgcgcatacgaactgg 184 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,195 Number of Sequences: 1807 Number of extensions: 13195 Number of successful extensions: 2270 Number of sequences better than 1.0e-20: 1 length of query: 950 length of database: 10,358,551 effective HSP length: 16 effective length of query: 934 effective length of database: 10,329,639 effective search space: 9647882826 effective search space used: 9647882826 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)