BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZB06FM1.SCF screened BAC_end
         (950 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig410                                                         1065   0.0  

>3x_Contig410 
          Length = 1641

 Score = 1065 bits (537), Expect = 0.0
 Identities = 677/709 (95%), Gaps = 11/709 (1%)
 Strand = Plus / Minus

                                                                       
Query: 91  tgatcagggtacggcacagtttatgattcacaggagattcattgaaccgattcaaacaat 150
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 886 tgatcagggtacggcacagtttaggattcacaggagattcattgaaccgattcaaacaat 827

                                                                       
Query: 151 cctgatagatcgccattttgtctggcaaggacccactgtgtgggtcctcagacttcttat 210
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 826 cctgatagatcgccattttgtctggcaaggacccactgtgtgggtc-tcagacttcttat 768

                                                                       
Query: 211 aagtttgtgcagacatgcaattggcagtgctaggataccttcaaatgacgtactaacctt 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aagtttgtgcagacatgcaattggcagtgctaggataccttcaaatgacgtactaacctt 708

                                                                       
Query: 271 tagtagccaattttgagcctattaacctcgtgttttatccaattctttttgccgtgtggt 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tagtagccaattttgagcctattaacctcgtgttttatccaattctttttgccgtgtggt 648

                                                                       
Query: 331 atggtatatatttatattcataatgttttcagtttgcaaatcggtagaagtcctttggaa 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atggtatatatttatattcataatgttttcagtttgcaaatcggtagaagtcctttggaa 588

                                                                       
Query: 391 tgaaaaaaaaagtgaagcgggtgtgtgaaagtgagggtaacacttgttttttaattatga 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgaaaaaaaaagtgaagcgggtgtgtgaaagtgagggtaacacttgttttttaattatga 528

                                                                       
Query: 451 tatatatgtatatatatatatatatatggatatggagatatatatgatatagcaggcaag 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tatatatgtatatatatatatatatatggatatggagatatatatgatatagcaggcaag 468

                                                                       
Query: 511 atcactgctgctgttcatctagagtcaggagtagttgtgcaagacatctcttggtaccta 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atcactgctgctgttcatctagagtcaggagtagttgtgcaagacatctcttggtaccta 408

                                                                       
Query: 571 catcgtcctgtagtgcttcattggaagtgttatcttcttatttgttgc-gcataac-tgt 628
           ||||||||||||||||||||||| | |||||||| ||||| ||||||| ||| ||| |||
Sbjct: 407 catcgtcctgtagtgcttcattgaaggtgttatc-tcttagttgttgcggcaaaacttgt 349

                                                                       
Query: 629 ttcaacaatctcttggc-tcttaaatatccgataatctta-gtagcatcttac-acatgt 685
           |||||||||||  |||| ||| || ||||||||||||||| |||||||||||| ||||||
Sbjct: 348 ttcaacaatcttctggcttctaaattatccgataatcttaggtagcatcttacaacatgt 289

                                                                       
Query: 686 ttcatttattttcccggcaccggttggttggaacatgtgcttaaaactattttggccaaa 745
           |||| | || ||||||||||| ||| ||||| |||||||||||||  ||  ||| | |||
Sbjct: 288 ttcaataatcttcccggcacctgtt-gttgggacatgtgcttaaacata-gttgccaaaa 231

                                                            
Query: 746 cttgtgacaaccgggtagaaccgttctggggttcgggcatacgaactgg 794
           |||||||| |||| ||||||||||||||||| ||| |||||||||||||
Sbjct: 230 cttgtgac-accgcgtagaaccgttctgggg-tcgcgcatacgaactgg 184


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,195
Number of Sequences: 1807
Number of extensions: 13195
Number of successful extensions: 2270
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)