BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB06RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1027 0.0
>3x_Contig1744
Length = 24119
Score = 1027 bits (518), Expect = 0.0
Identities = 628/652 (96%), Gaps = 11/652 (1%)
Strand = Plus / Plus
Query: 48 taccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaataccggc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15921 taccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaataccggc 15980
Query: 108 aacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttgggagaaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15981 aacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttgggagaaac 16040
Query: 168 tttcgccttataatgaccatatagttctagttcacttggatgtacaccaagttcattggc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16041 tttcgccttataatgaccatatagttctagttcacttggatgtacaccaagttcattggc 16100
Query: 228 aactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggcacttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16101 aactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggcacttt 16160
Query: 288 tgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctctctttg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16161 tgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctctctttg 16220
Query: 348 cctcttggcagccaaaagaacgttttgaaccaacatcgcaactgtcattggaccaactcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16221 cctcttggcagccaaaagaacgttttgaaccaacatcgcaactgtcattggaccaactcc 16280
Query: 408 acctggtacaggtgtaatgtaagaagccttgtctttacacaactcatagtcgacgtcacc 467
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 16281 acctggtacaggtgtaatgtaagaagccttgtctttacacaactcaaagtcgacgtcacc 16340
Query: 468 gaccaacttcctaccggattttntggatgcgtctgggacatagttaataccgacatca-t 526
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 16341 gaccaacttcctaccggattttttggatgcgtctgggacatagttaataccgacatcaat 16400
Query: 527 gacgattgcatcttgcttta-ccagtttggtttgaccattgtttgcacac-acaagcag- 583
|||||| ||||||||||||| |||||||||||||||||| || |||||| ||||||||
Sbjct: 16401 gacgatagcatcttgctttaaccagtttggtttgaccatgtttggcacaccacaagcagc 16460
Query: 584 tatgactacatcgccattttt-acacaatcg-caatgt-cttattgtatctatggcaaat 640
||||||||||||| ||||||| ||| |||| |||||| || | ||||||||||||||||
Sbjct: 16461 tatgactacatcggcattttttacaacatcggcaatgttctcagtgtatctatggcaaat 16520
Query: 641 gg-gactgttgcatttaaa--ctttaaca-tgatgcaccgggagttcccaca 688
| |||||||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 16521 tgtgactgttgcatttaaatcctttaacaatgatgcaacgggagttcccaca 16572
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6072
Number of Sequences: 1807
Number of extensions: 6072
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)