BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB07FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1750 1384 0.0
>3x_Contig1750
Length = 14427
Score = 1384 bits (698), Expect = 0.0
Identities = 792/817 (96%), Gaps = 6/817 (0%)
Strand = Plus / Plus
Query: 87 atccgggggtgaaaaagtggactaaaaaagctattatcgatgaattaaaagttgcaggat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12186 atccgggggtgaaaaagtggactaaaaaagctattatcgatgaattaaaagttgcaggat 12245
Query: 147 ctggtccaatatttgtgggtactgttgaagaggtagctgatacaattcaagaatgggttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12246 ctggtccaatatttgtgggtactgttgaagaggtagctgatacaattcaagaatgggttt 12305
Query: 207 catacgctgacgttgatggatttaatttgtcatatacttcgattccaagtacgtatgaaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12306 catacgctgacgttgatggatttaatttgtcatatacttcgattccaagtacgtatgaaa 12365
Query: 267 aaatcgttgacgaactattacctgaactcagaaaacgtggactggtccaggacgactatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12366 aaatcgttgacgaactattacctgaactcagaaaacgtggactggtccaggacgactatc 12425
Query: 327 ctgaaccaaagagctcacaaaagcttactttcagagagcaacttttcggtgacaacgatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12426 ctgaaccaaagagctcacaaaagcttactttcagagagcaacttttcggtgacaacgatt 12485
Query: 387 tggacgtcactcatcctgctcacgacttaaggtggagagagaatgaaacaaagtccgaat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12486 tggacgtcactcatcctgctcacgacttaaggtggagagagaatgaaacaaagtccgaat 12545
Query: 447 tcgaatccaggttgccaggtgccttggaaaaattaaaagggtttaactgactcgtagccg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12546 tcgaatccaggttgccaggtgccttggaaaaattaaaagggtttaactgactcgtagccg 12605
Query: 507 aattataaactttacctttttgatggagcgtgtgtaagacatagatatctcaccctgcta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12606 aattataaactttacctttttgatggagcgtgtgtaagacatagatatctcaccctgcta 12665
Query: 567 tcataccgcagatacacaaaccaaaaaatgattgctactcaatccactagtatatacttg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12666 tcataccgcagatacacaaaccaaaaaatgattgctactcaatccactagtatatacttg 12725
Query: 627 gatatttactagcccaaatgaagcaatatctcgtgtgaagctattctcaattgtgaattt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12726 gatatttactagcccaaatgaagcaatatctcgtgtgaagctattctcaattgtgaattt 12785
Query: 687 aagtggacttatcagtcattccttcagcaatcaagaagagatgttgccgaacaggatatt 746
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 12786 aagtggacttatcagtcattcctccagcaatcaagaagagatgttgccgaacaggatatt 12845
Query: 747 ccgtgcaacacctgaaataccg-aaaaaaacttactctcacataggac-acataggaca- 803
|||||||||||||||||||||| ||||||||| ||||||||| | ||| ||| | ||||
Sbjct: 12846 ccgtgcaacacctgaaataccgaaaaaaaactaactctcacaaaagacaacaaaagacaa 12905
Query: 804 -catagatctattca-atgaatcgcgaatatgatttgaatgtgacttgcctatttgaaga 861
| |||||| ||| |||||||||||||| | | |||||||||| ||||| |||||||
Sbjct: 12906 caaaagatcttatcaaatgaatcgcgaatagaagtagaatgtgactggcctagttgaaga 12965
Query: 862 t-cctttgggtttcatattacaatcatgaacttttgc 897
| | ||||||| ||||||||||||||||| |||||||
Sbjct: 12966 tacgtttgggtatcatattacaatcatgagcttttgc 13002
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6076
Number of Sequences: 1807
Number of extensions: 6076
Number of successful extensions: 25
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)