BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB07RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1176 0.0
>3x_Contig1778
Length = 27694
Score = 1176 bits (593), Expect = 0.0
Identities = 678/700 (96%), Gaps = 5/700 (0%)
Strand = Plus / Plus
Query: 44 ctttgaaaagagtaagggttctttttaccattatgggcttattcatcttatgctacatcc 103
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 16667 ctttgaaaagagtaagg-ttcttttcaccattatgggcttattcatcttatgctacatcc 16725
Query: 104 tcagacccatggtggaccagcgcaagttgaaagtgaaatggttggtcaaagaccttgata 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16726 tcagacccatggtggaccagcgcaagttgaaagtgaaatggttggtcaaagaccttgata 16785
Query: 164 ttacatctatttgaatacatgtataattctaaaatatctgaaagttgcatttgcatctta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16786 ttacatctatttgaatacatgtataattctaaaatatctgaaagttgcatttgcatcgca 16845
Query: 224 ttttatatgtatttaatcttttgtttgtcaccttcaaaagttaaaggcagaccctatttt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16846 ttttatatgtatttaatcttttgtttgtcaccttcaaaagttaaaggcagaccctatttt 16905
Query: 284 caattaatctttttattgaatggctaatctcacatattatttttatatctaaatagaaaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16906 caattaatctttttattgaatggctaatctcacatattatttttatatctaaatagaaaa 16965
Query: 344 gtgaatgtacttcttgatccaattataacaatagatcagtcttgggttgggaaagaagcc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16966 gtgaatgtacttcttgatccaattataacaatagatcagtcttgggttgggaaagaagcc 17025
Query: 404 atgagcttcgattttctaaaagttctacatcaaatagatcactataattgactaaacttt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17026 atgagcttcgattttctaaaagttctacatcaaatagatcactataattgactaaacttt 17085
Query: 464 cgaaatgaagttcactactggcctttctgttntattgttctttgtattgcaagtttttgc 523
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17086 cgaaatgaagttcactactggcctttctgttttattgttctttgtattgcaagtttttgc 17145
Query: 524 agaaaagttgaccgaattag-tgttggagtgaccaaagagcctgttgattgtaagatcaa 582
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 17146 agaaaagttgaccgaattagttgttggagtgaccaaggagcctgttgattgtaagatcaa 17205
Query: 583 ggcatctaaaggtgatgttgtctctgtgcactacactggtaaaattgaaggactctggtg 642
||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 17206 ggcatctaagggtgatgttgtctctgtgcactacactggt-aaattgagggactctggtg 17264
Query: 643 agatttttgactcatcggat-ataagggagttcccattcattttaagttgggttacaatc 701
||||||||||||||||| || ||| |||||| || ||||| |||||||||||||||| ||
Sbjct: 17265 agatttttgactcatcgtataataggggagtaccaattcaatttaagttgggttacagtc 17324
Query: 702 aagttatttatggaatgggatcaaggatttttaggaatgt 741
|||||||| ||| |||||||||||| ||||||||||||
Sbjct: 17325 aagttattagtgg-atgggatcaaggtattttaggaatgt 17363
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9738
Number of Sequences: 1807
Number of extensions: 9738
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)