BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZB08RM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1140                                                        1072   0.0  

>3x_Contig1140 
          Length = 5352

 Score = 1072 bits (541), Expect = 0.0
 Identities = 629/652 (96%), Gaps = 5/652 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   atatgcagcgctgtacttttcccggagaggtttcaaagcatcaacatatttctgtttctc 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  atatgcagcgctgtacttttcccggagaggtttcaaagcatcaacatatttctgtttctc 555

                                                                        
Query: 105  actttctgatagtgacctccactgtttccctgcaatcttcatagcgccagggttggaaac 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  actttctgatagtgacctccactgtttccctgcaatcttcatagcgccagggttggaaac 615

                                                                        
Query: 165  attgtgtgatgcgcaaatatgatcgtgcacttggctgaaatagtaatagtatgcagttgg 224
            |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 616  attgtgtgatgcgcaaatatgatcgtgcacttggctgaaatagtaagagaatgcagttgg 675

                                                                        
Query: 225  tggtctctttggcttgactgctgcttcaagagcaattggggaaactgacaaaaagcgttt 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  tggtctctttggcttgactgctgcttcaagagcaattggggaaactgacaaaaagcgttt 735

                                                                        
Query: 285  aaatatcatagttgaatagttagtcgattccttagtagaatactttgttatacttttgaa 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  aaatatcatagttgaatagttagtcgattccttagtagaatactttgttatacttttgaa 795

                                                                        
Query: 345  gggaagtaatagaatgagtagataatatatttaagcgtttgacttgtacaagaaacttgg 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  gggaagtaatagaatgagtagataatatatttaagcgtttgacttgtacaagaaacttgg 855

                                                                        
Query: 405  catgggtttgtattatagcggatgattgcttgtttttaattgtttgtttttgttttggaa 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  catgggtttgtattatagcggatgattgcttgtttttaattgtttgtttttgttttggaa 915

                                                                        
Query: 465  gggtaaaaaaaaggtctcataagatgggggggcgggtagcgctcgagaagatttctgant 524
            |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 916  gggtaaaaaaaaggtctcataaga-gggggggcgggtagcgctcgagaagatttctgatt 974

                                                                        
Query: 525  tataagtcacgtgtatgtccgatttaaggtgaaatggacttgggttatcaaaa-taggtt 583
            |||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct: 975  tataagtcacgtgtatgtccgattaagggtgaaatggacttgggttatcaaaattaggtt 1034

                                                                        
Query: 584  acaatgccattcaaattattgagatttggactggaattgcatgatctttgaaaaagcctt 643
            |||||||||||||||||||||||||||| |||| |||   |||||| | || |||| | |
Sbjct: 1035 acaatgccattcaaattattgagatttgaactgaaatgcaatgatcatggagaaag-cgt 1093

                                                                
Query: 644  ttaacggatatcaaccgggtgaatttttgtcgaaccaagtccttgctaatat 695
            |  ||||||| |||||||||| |||||||||| ||||||| |||||||||||
Sbjct: 1094 tagacggatagcaaccgggtg-atttttgtcg-accaagtacttgctaatat 1143


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7724
Number of Sequences: 1807
Number of extensions: 7724
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)