BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB09FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1258 1350 0.0
>3x_Contig1258
Length = 6899
Score = 1350 bits (681), Expect = 0.0
Identities = 723/733 (98%), Gaps = 3/733 (0%)
Strand = Plus / Plus
Query: 88 gcatggaagattttttgctaccagtactttccctatcagcatcaacatttgacgatcctg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5464 gcatggaagattttttgctaccagtactttccctatcagcatcaacatttgacgatcctg 5523
Query: 148 gagaacgtaattgtgacatgaaggagtctataaaagatgtccgcggccgacgtggctggt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5524 gagaacgtaattgtgacatgaaggagtctataaaagatgtccgcggccgacgtggctggt 5583
Query: 208 gatggttttccggatttgaaggaatttcgctttgtgaggaaacatgagaaggactcggca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5584 gatggttttccggatttgaaggaatttcgctttgtgaggaaacatgagaaggactcggca 5643
Query: 268 tgagagcgctaggccctgattcccttcttgggatattaatgaattgtttattgttttcat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5644 tgagagcgctaggccctgattcccttcttgggatattaatgaattgtttattgttttcat 5703
Query: 328 cttcttcgaacgccctttttgtaagttcctctctttcttctccttcttcctcttcatcaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5704 cttcttcgaacgccctttttgtaagttcctctctttcttctccttcttcctcttcatcaa 5763
Query: 388 ttgctagttctgctctatctccatgagattgacgcagctttctaatttcgatgatatcgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5764 ttgctagttctgctctatctccatgagattgacgcagctttctaatttcgatgatatcgt 5823
Query: 448 tctgtaacgaattttgaatcgagtcagccctcgatatagtcgtagtttcttttgaacctt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5824 tctgtaacgaattttgaatcgagtcagccctcgatatagtcgtagtttcttttgaacctt 5883
Query: 508 gaagttgagcctttaaatgtgatactggaggagtttgggttagatgagtgggttcgttga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5884 gaagttgagcctttaaatgtgatactggaggagtttgggttagatgagtgggttcgttga 5943
Query: 568 aagaatgtctattatttgtatttaccgaggagctcagatccgtagcactatatgaactgt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5944 aagaatgtctattatttgtatttaccgaggagctcagatccgtagcactatatgaactgt 6003
Query: 628 agccactagcaacagatgcttgccttgcctctttc-agctagtaaaactgtcattttttt 686
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6004 agccactagcaacagatgcttgccttgcctctttcaagctagtaaaactgtcattttttt 6063
Query: 687 tcccaggttggtcaatggacgattgatcgttgacttcttggtcagctgtcacgtcaacag 746
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6064 tccaaggttggtcaatggacgattgatcgttgacttcttggtcagctgtcacgtcaacag 6123
Query: 747 ccattgactccgtttaggactttcagttcccttaataatgaatccccgcattagatgcca 806
||||||||| || |||||||||||| |||| ||||||||||| ||||||||||| ||||
Sbjct: 6124 ccattgact-cggttaggactttcaagtcccataataatgaat-cccgcattagaagcca 6181
Query: 807 atttttgtagttt 819
| |||||||||||
Sbjct: 6182 aattttgtagttt 6194
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7843
Number of Sequences: 1807
Number of extensions: 7843
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)