BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB09RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig251 785 0.0
3x_Contig943 601 e-171
>3x_Contig251
Length = 1124
Score = 785 bits (396), Expect = 0.0
Identities = 530/565 (93%), Gaps = 8/565 (1%)
Strand = Plus / Minus
Query: 336 tccataaaccttttctgtaagcttttgcaagctgtgatcaagttaagcaaacgacacatc 395
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 tccataaaccttttctgtaaggttttgcaagctgtgatcaagttaagcaaacgacacatc 1065
Query: 396 actttctatcttataattaagagagaaaatggctgccgaaggtaacacttatttctcttt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 actttctatcttataattaagagagaaaatggctgccgaaggtaacacttatttctcttt 1005
Query: 456 cccggaagatgaagagaaagtcttagccttctggaatgaaattgatgctttccatacttc 515
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 cccggaagaggaagagaaagtcttagccttctggaatgaaattgatgctttccatacttc 945
Query: 516 tttgaagcttactgaagataagcctgaattctccttcttcgatggtcctncattcgctac 575
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 944 tttgaagcttactgaagataagcctgaattctccttcttcgatggtcctccattcgctac 885
Query: 576 tggtactccccactatggtcacttgctagcgtncactgtgaaagatatcgttccaagata 635
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 884 tggtactccccactatggtcacttgctagcgtccactgtgaaagatatcgttccaagata 825
Query: 636 tgctaccatgacaggacatcacgttgaaagatgattcngttgggatacacatggttttgc 695
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct: 824 tgctaccatgacaggacatcacgttgaaagaagattcggttgggatacacatgg-tttgc 766
Query: 696 caattgaacacatcattgacaagaaactgatcattaccctgtagggaggatgtgtatgca 755
|||||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||
Sbjct: 765 caattgaacacatcattgacaagaaactgaacatca-cctgtaaggaggatgtgtatgca 707
Query: 756 tttcgtattcgac-actattacattgaatgttaggcctattgttttcccttacgctgagg 814
|| ||| ||||| ||||| ||| |||||| |||| ||||||||| | ||||||||||||
Sbjct: 706 ttcggta-tcgacaactataacaatgaatg-tagggctattgtttccacttacgctgagg 649
Query: 815 aattggagtatgacttttggccgtttaagtcgttgggattgatttccatgaccatttaca 874
|| ||||| | |||| | ||||||||| |||||| ||||||||||| ||||| ||| |
Sbjct: 648 aa-tggagaaagactatcggccgtttaggtcgtt-ggattgatttcgatgacgattacaa 591
Query: 875 gaaaatgtatctcaactttcatgga 899
|| |||||||| |||||||||||||
Sbjct: 590 gacaatgtatc-caactttcatgga 567
>3x_Contig943
Length = 2708
Score = 601 bits (303), Expect = e-171
Identities = 309/311 (99%)
Strand = Plus / Plus
Query: 45 cttcactcatcgcagcgtcgattttgcgagaggtgagatgttggcacatttgtagattct 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2394 cttcactcatcgcagcgtcgatttggcgagaggtgagatgttggcacatttgtagattct 2453
Query: 105 ttatttcacagaatccatcgtcatccgctgcggcaggacagagtgacggatttgacttta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2454 ttatttcacagaatccatcgtcatccgctgcggcaggacagagtgacggatttgacttta 2513
Query: 165 agataattttgatatcatgtgacagcaagacatatcacgtttgacgactttgataatttt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2514 agataattttgatatcatgtgacagcaagacatatcacgtttgacgactttgataatttt 2573
Query: 225 tgaaaaattcgaactctggaatcgattggaaactatgactctaaacggattcgaaaaagc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2574 tgaaaaattcgaactctggaatcgattggaaactatgactctaaacggattcgaaaaagc 2633
Query: 285 tctagttgatttgaaatagcgtagttttatgtcacaaaatactttcgttcgtccataaac 344
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 tctagttgatttgaaatagcgtagttttatgtcacaaaatacttacgttcgtccataaac 2693
Query: 345 cttttctgtaa 355
|||||||||||
Sbjct: 2694 cttttctgtaa 2704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7055
Number of Sequences: 1807
Number of extensions: 7055
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)