BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZB10FM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1762                                                        1017   0.0  

>3x_Contig1762 
          Length = 22098

 Score = 1017 bits (513), Expect = 0.0
 Identities = 627/657 (95%), Gaps = 6/657 (0%)
 Strand = Plus / Plus

                                                                         
Query: 89    ttaactcagcgtactgcgaattctctattgggagacacatctgaagaaaagaagtcattt 148
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11166 ttaactcagcgtactgcgaattctctattgggagacacatctgaagaaaagaagtcattt 11225

                                                                         
Query: 149   tacgaagaattttgtagtaagaatgttgaggatttggaattggcacattaccaaaatcca 208
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11226 tacgaagaattttgtagtaagaatgttgaggatttggaattggcacattaccaaaatcca 11285

                                                                         
Query: 209   acccaagaatttaacttgaatctcctaacagggctagattcattcgattttgaattagag 268
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11286 acccaagaatttaacttgaatctcctaacagggctagattcattcgattttgaattagag 11345

                                                                         
Query: 269   atatggaggaaacgtcatgatttatagacacgttaacttccacctcgaaaacaaatcaat 328
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11346 atatggaggaaacgtcatgatttatagacacgttaacttccacctcgaaaacaaatcaat 11405

                                                                         
Query: 329   atttagttatcttacgaagtgaccataagagaaataatattatattgcagtttttaagtt 388
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11406 atttagttatcttacgaagtgaccataagagaaataatattatattgcagtttttaagtt 11465

                                                                         
Query: 389   aattatatatgaacatgagaatatagaaatgatagtaatttttttttttttgtaaagctt 448
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11466 aattatatatgaacatgagaatatagaaatgatagtaatttttttttttttgtaaagctt 11525

                                                                         
Query: 449   tatctattgctcaaccttacccaaaggttgccccattttgactttgtcgccaacgttgat 508
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11526 tatctattgctcaaccttacccaaaggttgccccattttgactttgtcgccaacgttgat 11585

                                                                         
Query: 509   ttttgagttaaactctcttggggcttc-aagcat-aaaccactgttgatcct-acatgaa 565
             |||  |||||||||||||||| ||||| |||||| ||||||||||||||||| |||||||
Sbjct: 11586 tttgaagttaaactctcttggtgcttcaaagcataaaaccactgttgatcctaacatgaa 11645

                                                                         
Query: 566   accacccttttcttcaccctttattaaa-gcacgccaact-attctttgctagcattttc 623
             ||||||| |||||||||||||||| ||| |||||||| || || ||||||||||||||||
Sbjct: 11646 accacccatttcttcaccctttatcaaaggcacgccacctaatactttgctagcattttc 11705

                                                                         
Query: 624   atatgttgcttcattacaagtatgcggttaacaaggcctctgaattttttcattggaaat 683
             |||||||||||||| |||||||||||||| |||| | |||||| |||||||||| | || 
Sbjct: 11706 atatgttgcttcataacaagtatgcggtttacaatgtctctgagttttttcatttgtaa- 11764

                                                                      
Query: 684   ttggttcttaataaaattccatttggatcgatccgacttttgttgcttcgactgggg 740
             || |||||| || ||| | || || |||||||||||| ||||| ||| |||||||||
Sbjct: 11765 ttagttctttatcaaagttcaatttgatcgatccgacatttgtagctccgactgggg 11821


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,603
Number of Sequences: 1807
Number of extensions: 14603
Number of successful extensions: 224
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)