BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB10RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1011 0.0
>3x_Contig1338
Length = 8134
Score = 1011 bits (510), Expect = 0.0
Identities = 590/610 (96%), Gaps = 5/610 (0%)
Strand = Plus / Minus
Query: 50 atagagattgatacttatacagttt-aacatgcttagatgttagatgggtacaagaagat 108
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5302 atagagattgatacttatacagtttcaacatgcttagatgttagatgggtacaagaagat 5243
Query: 109 tctgacagaagcaccgaaagtcttagctggcaagttagatctgaatgtagctctaacgac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5242 tctgacagaagcaccgaaagtcttagctggcaagttagatctgaatgtagctctaacgac 5183
Query: 169 accggagttaccgtgtgttctgttgatcttaccccatatatttctgatcttggaacctct 228
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 5182 accggagttaccgtgtgttctgttgatcttaccccagataactctgatcttggaacctct 5123
Query: 229 gacttccttggagcatctgtagacataggcgactctcttacccaagtagaacttagcgtc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5122 gacttccttggagcatctgtagacataggcgactctcttacccaagtagaacttagcgtc 5063
Query: 289 ttctgggttggcaacaccttcaatcttgaccaaagagacgtttgggttgttaacgctctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5062 ttctgggttggcaacaccttcaatcttgaccaaagagacgtttgggttgttaacgctctt 5003
Query: 349 ggatctttggtatgacaaatgcttacctttgacgtacactgtaaaaattaaaccacgtag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5002 ggatctttggtatgacaaatgcttacctttgacgtacactgtaaaaattaaaccacgtag 4943
Query: 409 ggatgaaaaaggttagtaagggtgagtttttaattggaggtccagatagtacaggtaatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4942 ggatgaaaaaggttagtaagggtgagtttttaattggaggtccagatagtacaggtaatg 4883
Query: 469 ctgccacgagtgaataaaattatattcatccatgaaaacagaacctcatatgatttgtca 528
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 4882 ctgccacgagtgaataaaataatattcatccatgaaaacagaacctcatatga-ttgtca 4824
Query: 529 ttataatgaagagtttaccccattagaaaggaaatgaacatggatttgttatggtctgcc 588
| |||||||||||| ||||||||||| |||| |||||||||||||||||||| ||||| |
Sbjct: 4823 taataatgaagagtataccccattag-aagggaatgaacatggatttgttat-gtctgtc 4766
Query: 589 ctgcctaatttcagtactaaattttcacgtacttagtactttccgccgttttccgaaaaa 648
||| ||||| ||||||||||||||||||||||| ||||| ||||| ||| ||||||||||
Sbjct: 4765 ctggctaatatcagtactaaattttcacgtactaagtac-ttccgtcgtattccgaaaaa 4707
Query: 649 gttggataga 658
| | ||||||
Sbjct: 4706 ggttgataga 4697
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,364
Number of Sequences: 1807
Number of extensions: 18364
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)