BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZB11RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1396 0.0
>3x_Contig1720
Length = 19870
Score = 1396 bits (704), Expect = 0.0
Identities = 799/827 (96%), Gaps = 3/827 (0%)
Strand = Plus / Plus
Query: 50 accaggaatacgtctttctgctggaaacgaggaactcgcttttgactaaagcattaagtt 109
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9497 accaggaatacgtcgatctgctggaaacgaggaactcgcttttgactaaagcattaagtt 9556
Query: 110 atttattcagacagttcgatagatgtgttgatagcggcttagtgcagatccatcctgata 169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 9557 atttattcagacagttcgatagatgtgttgatagcggcttagtgcagatccatcctgaga 9616
Query: 170 gattttcggagttcaggcagttacaaatgcaatccatgattctctttttatgatctgata 229
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 9617 gattttcggagttcaggcagttacaaatgcaatccatgattctcaatcaaagatctgata 9676
Query: 230 tggatgatctagattcggacgaatatgatgaatgggaacaagtgggttcgagtcaaaacc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9677 tggatgatctagattcggacgaatatgatgaatgggaacaagtgggttcgagtcaaaacc 9736
Query: 290 ctgagctttctgttcgcgacggaccggctgctgcatggatgaacttacgtaagaacaaaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9737 ctgagctttctgttcgcgacggaccggctgctgcatggatgaacttacgtaagaacaaaa 9796
Query: 350 atttattcatcaacaaagagacgggaaaactgaacgtgaatgaagttgtttattctatta 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9797 atttattcatcaacaaagagacgggaaaactgaacgtgaatgaagttgtttattctatta 9856
Query: 410 tcccaacaaacgtcgacatggcagtgaaatctctgaattacatacacggtggtagggaac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9857 tcccaacaaacgtcgacatggcagtgaaatctctgaattacatacacggtggtagggaac 9916
Query: 470 agattgatagagccgctctggaggctgggtctaataataaaacatcttctcatgtctatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9917 agattgatagagccgctctggaggctgggtctaataataaaacatcttctcatgtctatg 9976
Query: 530 ataaattacttgctcgaggttatgtcgattcggaaactttgtttacatcagatcattcaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9977 ataaattacttgctcgaggttatgtcgattcggaaactttgtttacatcagatcattcaa 10036
Query: 590 aggaaggcataccagatgatgcatatatcgaactcccgattagaatacggagaaagatgt 649
|||||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||
Sbjct: 10037 aggaaggcataccagaggatgcaaatatcgaactcccgaaaagaaaacggagaaagatgt 10096
Query: 650 tgtcgcccaatgaagcacgtggtattccttatagcagtcaaatacaacattctgattcga 709
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 10097 tgtcgcccaatgaagcacgtggtattcctaatagcagtcaaatacaacaatctgattcga 10156
Query: 710 tggtccagatattgccaatttcagcaatggcagacaccgtttcattgaaacaagatgtan 769
|||||||||||||||||||| |||||||||||||||||||| || |||| |||||||||
Sbjct: 10157 tggtccagatattgccaattccagcaatggcagacaccgttacaatgaagcaagatgtag 10216
Query: 770 atggggcgcgtaccgacagatt-ttattcttacagttgaatgatccaaagg-gcgggaac 827
|| ||||||||||||||||||| | ||||| ||||| |||||||||||||| |||| |||
Sbjct: 10217 at-gggcgcgtaccgacagattataattctaacagtagaatgatccaaaggagcggaaac 10275
Query: 828 atctcattagataacgctgcaaatcagttttcatattcgaatcaagc 874
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10276 atctcattagataacgctgcaaatcagttatcatattcgaatcaagc 10322
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6095
Number of Sequences: 1807
Number of extensions: 6095
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)