BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZB12RM1.SCF screened BAC_end
         (985 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1566                                                        1072   0.0  

>3x_Contig1566 
          Length = 10355

 Score = 1072 bits (541), Expect = 0.0
 Identities = 698/735 (94%), Gaps = 12/735 (1%)
 Strand = Plus / Minus

                                                                        
Query: 50   aacgttcggctagaagtagcactgcacgaaacagtattagtagaaatagtgttggtcgaa 109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5509 aacgttcggctagaagtagcactgcacgaaacagtattagtagaaatagtgttggtcgaa 5450

                                                                        
Query: 110  atagtattggtcgaaacagatctaaaacagagagtcaaggacacattaatgatgttgaag 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5449 atagtattggtcgaaacagatctaaaacagagagtcaaggacacattaatgatgttgaag 5390

                                                                        
Query: 170  aacctgcagatgatgagaatagtgattatgaaccatccaaatcagaaatgcttaatgaaa 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5389 aacctgcagatgatgagaatagtgattatgaaccatccaaatcagaaatgcttaatgaaa 5330

                                                                        
Query: 230  tgtactgtgtgcctgatgcggaaaatgatgaattcgaaagtttgcagcagagtataaaca 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5329 tgtactgtgtgcctgatgcggaaaatgatgaattcgaaagtttgcagcagagtataaaca 5270

                                                                        
Query: 290  tgttccaggtctgcttcatcatgaacccaaagatcatagaatataatgaaagagtcgatg 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5269 tgttccaggtctgcttcatcatgaacccaaagatcatagaatataatgaaagagtcgatg 5210

                                                                        
Query: 350  atatgtatcattacgtggtgactagattatcattgattttaaggtacatacaaggaaaaa 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5209 atatgtatcattacgtggtgactagattatcattgattttaaggtacatacaaggaaaaa 5150

                                                                        
Query: 410  ccggttatgtcactagggaatgcgtgaaaattatgaagtgtaaggacgaagtttctaaac 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5149 ccggttatgtcactagggaatgcgtgaaaattatgaagtgtaaggacgaagtttctaaac 5090

                                                                        
Query: 470  actctcgatattatgagtncttaaaatctccctggtct-aagggatatatatgtatgaaa 528
            ||||||||||||||||||  |||||||||||||||||| |||| | ||||||||||||||
Sbjct: 5089 actctcgatattatgagtctttaaaatctccctggtctaaaggaaaatatatgtatgaaa 5030

                                                                        
Query: 529  g-attctttacgattcgtcactagctagagcgtt-acanaatgtttc-attgcatccata 585
            | ||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct: 5029 gaattctttacgaatcgtcactagctagagcgttaacaaaatgtttcaattgcatccata 4970

                                                                        
Query: 586  tcaatg-aattgctaatcttg-aattgatggtgataaaattgttt-cttgcagatt-caa 641
             ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||
Sbjct: 4969 acaatgaaattgctaatcttgaaattgatggtgataaaattgtttccttgcagattccaa 4910

                                                                        
Query: 642  tc-aaaatg-atttttcattcttcc-aatttaaaagagattgctg-tcttcgaggaatct 697
            || |||||| ||||| ||||||||| |||||||||||   ||||| |||||| |||   |
Sbjct: 4909 tcaaaaatgaattttccattcttccaaatttaaaagaagatgctgttcttcgtggatctt 4850

                                                                        
Query: 698  tcttattctcaatactaaaccaaagtttatttgttagaagccctaccttgacaaacaatg 757
            |||||| ||||||||||||| |||||||  ||| ||||||| ||| |||||||||| | |
Sbjct: 4849 tcttatcctcaatactaaacgaaagttttattggtagaagcactagcttgacaaacgaag 4790

                           
Query: 758  attcagattatttgt 772
            |||||||| ||||||
Sbjct: 4789 attcagataatttgt 4775


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8083
Number of Sequences: 1807
Number of extensions: 8083
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)