BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC36ZB12RM1.SCF screened BAC_end (985 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1566 1072 0.0 >3x_Contig1566 Length = 10355 Score = 1072 bits (541), Expect = 0.0 Identities = 698/735 (94%), Gaps = 12/735 (1%) Strand = Plus / Minus Query: 50 aacgttcggctagaagtagcactgcacgaaacagtattagtagaaatagtgttggtcgaa 109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5509 aacgttcggctagaagtagcactgcacgaaacagtattagtagaaatagtgttggtcgaa 5450 Query: 110 atagtattggtcgaaacagatctaaaacagagagtcaaggacacattaatgatgttgaag 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5449 atagtattggtcgaaacagatctaaaacagagagtcaaggacacattaatgatgttgaag 5390 Query: 170 aacctgcagatgatgagaatagtgattatgaaccatccaaatcagaaatgcttaatgaaa 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5389 aacctgcagatgatgagaatagtgattatgaaccatccaaatcagaaatgcttaatgaaa 5330 Query: 230 tgtactgtgtgcctgatgcggaaaatgatgaattcgaaagtttgcagcagagtataaaca 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5329 tgtactgtgtgcctgatgcggaaaatgatgaattcgaaagtttgcagcagagtataaaca 5270 Query: 290 tgttccaggtctgcttcatcatgaacccaaagatcatagaatataatgaaagagtcgatg 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5269 tgttccaggtctgcttcatcatgaacccaaagatcatagaatataatgaaagagtcgatg 5210 Query: 350 atatgtatcattacgtggtgactagattatcattgattttaaggtacatacaaggaaaaa 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5209 atatgtatcattacgtggtgactagattatcattgattttaaggtacatacaaggaaaaa 5150 Query: 410 ccggttatgtcactagggaatgcgtgaaaattatgaagtgtaaggacgaagtttctaaac 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5149 ccggttatgtcactagggaatgcgtgaaaattatgaagtgtaaggacgaagtttctaaac 5090 Query: 470 actctcgatattatgagtncttaaaatctccctggtct-aagggatatatatgtatgaaa 528 |||||||||||||||||| |||||||||||||||||| |||| | |||||||||||||| Sbjct: 5089 actctcgatattatgagtctttaaaatctccctggtctaaaggaaaatatatgtatgaaa 5030 Query: 529 g-attctttacgattcgtcactagctagagcgtt-acanaatgtttc-attgcatccata 585 | ||||||||||| |||||||||||||||||||| ||| |||||||| |||||||||||| Sbjct: 5029 gaattctttacgaatcgtcactagctagagcgttaacaaaatgtttcaattgcatccata 4970 Query: 586 tcaatg-aattgctaatcttg-aattgatggtgataaaattgttt-cttgcagatt-caa 641 ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||| Sbjct: 4969 acaatgaaattgctaatcttgaaattgatggtgataaaattgtttccttgcagattccaa 4910 Query: 642 tc-aaaatg-atttttcattcttcc-aatttaaaagagattgctg-tcttcgaggaatct 697 || |||||| ||||| ||||||||| ||||||||||| ||||| |||||| ||| | Sbjct: 4909 tcaaaaatgaattttccattcttccaaatttaaaagaagatgctgttcttcgtggatctt 4850 Query: 698 tcttattctcaatactaaaccaaagtttatttgttagaagccctaccttgacaaacaatg 757 |||||| ||||||||||||| ||||||| ||| ||||||| ||| |||||||||| | | Sbjct: 4849 tcttatcctcaatactaaacgaaagttttattggtagaagcactagcttgacaaacgaag 4790 Query: 758 attcagattatttgt 772 |||||||| |||||| Sbjct: 4789 attcagataatttgt 4775 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8083 Number of Sequences: 1807 Number of extensions: 8083 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 985 length of database: 10,358,551 effective HSP length: 16 effective length of query: 969 effective length of database: 10,329,639 effective search space: 10009420191 effective search space used: 10009420191 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)