BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC01FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1400 0.0
>3x_Contig1663
Length = 13533
Score = 1400 bits (706), Expect = 0.0
Identities = 767/782 (98%), Gaps = 4/782 (0%)
Strand = Plus / Minus
Query: 86 tggagcagctggggtggtccatggcttaacagcaccttgggcatcggcagctgtgattgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10647 tggagcagctggggtggtccatggcttaacagcaccttgggcatcggcagctgtgattgg 10588
Query: 146 cttcaaattcacggccttcaattcctttaagtataggtcttggatgacattacgtctgat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10587 cttcaaattcacggccttcaattcctttaagtataggtcttggatgacattacgtctgat 10528
Query: 206 gaaactggtggaaaaaccacggctggctcttaaggtcaatggtacggctctgaacattat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10527 gaaactggtggaaaaaccacggctggctcttaaggtcaatggtacggctctgaacattat 10468
Query: 266 gtaacactttcttgtgctttccctaggctagtctaaaacacttcatttataagttaccgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10467 gtaacactttcttgtgctttccctaggctagtctaaaacacttcatttataagttaccgg 10408
Query: 326 tgtctattcgctcactaacggaatcttcattccaattaaacctttgaacctcaattttct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10407 tgtctattcgctcactaacggaatcttcattccaattaaacctttgaacctcaattttct 10348
Query: 386 tggtgcatataaatcatataatacgaacatgatatttattggttcgttagtggtgatgag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10347 tggtgcatataaatcatataatacgaacatgatatttattggttcgttagtggtgatgag 10288
Query: 446 tcacgtgaacacttgattgggatatatagctgtatactaatgcaccagatacatgagtac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10287 tcacgtgaacacttgattgggatatatagctgtatactaatgcaccagatacatgagtac 10228
Query: 506 aaacccacctcagatcggcgaatgatactcatgagacagaaactgatgcttgtattgatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10227 aaacccacctcagatcggcgaatgatactcatgagacagaaactgatgcttgtattgatc 10168
Query: 566 attaacgttatgttacggggcaggatcattacctcttcaactgcttcacagtatgattaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10167 attaacgttatgttacggggcaggatcattacctcttcaactgcttcacagtatgattaa 10108
Query: 626 tggacttctgaagaagagacggatcatgaaacttcatcgagtaagtattattccaggcca 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10107 tggacttctgaagaagagacggatcatgaaacttcatcgagtaagtattattccaggcca 10048
Query: 686 acgtcctttggagtgggaggacggacgtagattcgtttaaag-tggttttgcgacactat 744
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10047 acgtccttggaggtgggaggacggacgtagattcgtttaaagttggttttgcgacactat 9988
Query: 745 tacggtttacgttt-ctctttgtggctgtttactcacttttaacaaatgaccatttctta 803
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 9987 tacggtttacgtttcctctttgtggctgtttactcacttttaacaaatgaccaatatcta 9928
Query: 804 ttcggttctttgggctggaaaattctttcgtaaccccggaaatcctttgtaaattgcatc 863
||||||||| ||| || |||||||| ||||||| |||||| |||||||||||||||||||
Sbjct: 9927 ttcggttctctggtct-gaaaattcgttcgtaa-cccggagatcctttgtaaattgcatc 9870
Query: 864 aa 865
||
Sbjct: 9869 aa 9868
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5617
Number of Sequences: 1807
Number of extensions: 5617
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)