BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC01RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1548 1294 0.0
>3x_Contig1548
Length = 9830
Score = 1294 bits (653), Expect = 0.0
Identities = 715/729 (98%), Gaps = 5/729 (0%)
Strand = Plus / Plus
Query: 49 agaaaaagacagaatcatagcaattttgccagtacctactgtcaacatcttcgaatgagg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 agaaaaagacagaatcatagcaattttgccagtacctactgtcaacatcttcgaatgagg 251
Query: 109 gctctatcaaaatatatgcctttgtttataaactcatctgtccaacttttggcattattc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gctctatcaaaatatatgcctttgtttataaactcatctgtccaacttttggcattattc 311
Query: 169 tggttatgtaaactgaaactcttttcaatatgaaaatggcgtaataaaaatattcataac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tggttatgtaaactgaaactcttttcaatatgaaaatggcgtaataaaaatattcataac 371
Query: 229 aggtacttgtcatatcgaacaagattgagttttgttcgatgcaacgaagagagtaaggat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggtacttgtcatatcgaacaagattgagttttgttcgatgcaacgaagagagtaaggat 431
Query: 289 ctaatggtgtcgaatcatatgccagagagattgttcatagtggatcatgtcagtagaaat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctaatggtgtcgaatcatatgccagagagattgttcatagtggatcatgtcagtagaaat 491
Query: 349 tgattgggataatatccgtggggatttaagcgttaatcaaggtgtgaaggactttttaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgattgggataatatccgtggggatttaagcgttaatcaaggtgtgaaggactttttaaa 551
Query: 409 ctctcggctacaagagtttgaactgcccagttacgtgaataatcttaaggtaactaattt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctctcggctacaagagtttgaactgcccagttacgtgaataatcttaaggtaactaattt 611
Query: 469 cgatttaggtactatgcctccaaatgttatattaaaacagatggatgatcctttagatga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cgatttaggtactatgcctccaaatgttatattaaaacagatggatgatcctttagatga 671
Query: 529 gttttattcttatctgttacaagaaggagatatttcataagaagctgcgaaggataagaa 588
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 672 gttttattcttatctgttacaagaaggagatatttcaaaagaagctgcgaaggataagaa 731
Query: 589 cactgatgtgcaactattagtggaacttgattataaaagtgatatgagcattgaattgtc 648
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 732 cactgatgtgcaactattagtggaacttgattataaaggtgatatgagcattgaattgtc 791
Query: 649 agctgatcttgttcttaattacccgagccccgcatttcatgattttaccagtttaagcta 708
||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct: 792 agctgatcttgttcttaattacccgag-cccgcagttcatgattttaccag-ttaagcta 849
Query: 709 cgaataaagtgatatttgccatgcccttgtttatccctgcttgcatttttgaagaaacag 768
||||| |||||||| ||| ||||| | || |||| |||||| |||| |||||||||||||
Sbjct: 850 cgaat-aagtgata-ttggcatgcac-tgcttatgcctgctcgcatatttgaagaaacag 906
Query: 769 ctttttatt 777
|||||||||
Sbjct: 907 ctttttatt 915
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8385
Number of Sequences: 1807
Number of extensions: 8385
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)