BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC02FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1753 1566 0.0
>3x_Contig1753
Length = 23959
Score = 1566 bits (790), Expect = 0.0
Identities = 832/841 (98%), Gaps = 4/841 (0%)
Strand = Plus / Minus
Query: 87 ctaatccaaacccctatatataaaaaaaacccattcaattagcgttgtacatctaattct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17881 ctaatccaaacccctatatataaaaaaaacccattcaattagcgttgtacatctaattct 17822
Query: 147 aaatctgatttagggagttagagaatggacaatggcagcgcaaagcgctgccattatcct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17821 aaatctgatttagggagttagagaatggacaatggcagcgcaaagcgctgccattatcct 17762
Query: 207 atcttttccctcccaacatttaaccggaaacctaacaaagtaataaaacatatccaaact 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17761 atcttttccctcccaacatttaaccggaaacctaacaaagtaataaaacatatccaaact 17702
Query: 267 ttttaaccacccaattaacccaccgtaatcaaatatacgtttccacacataccagaatcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17701 ttttaaccacccaattaacccaccgtaatcaaatatacgtttccacacataccagaatcc 17642
Query: 327 atattgttatactatagcgcgtgaagatgttgtacaattccttttgcaatcaacaaaaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17641 atattgttatactatagcgcgtgaagatgttgtacaattccttttgcaatcaacaaaaaa 17582
Query: 387 accgttattctgaaacaacctttcttctctttggatcgtaaaagacagtaaagaaggagg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17581 accgttattctgaaacaacctttcttctctttggatcgtaaaagacagtaaagaaggagg 17522
Query: 447 aaacaaatcaagatatttcttatttttcttgtaaattaaatcaaatttcaaactctctca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17521 aaacaaatcaagatatttcttatttttcttgtaaattaaatcaaatttcaaactctctca 17462
Query: 507 tacaataaatcgcactagctgtccagagaaacagaagagaaaatttcgaaaaaacaaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17461 tacaataaatcgcactagctgtccagagaaacagaagagaaaatttcgaaaaaacaaatt 17402
Query: 567 aaaaaaaaaaaaagaattctgatgaaaaataggagacgattgtcattgtccacgaggcgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17401 aaaaaaaaaaaaagaattctgatgaaaaataggagacgattgtcattgtccacgaggcgg 17342
Query: 627 agcagttgcggtaatggttttctagtggttacgtgggattcactgtacagctggaggggc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17341 agcagttgcggtaatggttttctagtggttacgtgggattcactgtacagctggaggggc 17282
Query: 687 ggacttgcaattgaaggctttgtgaaggctggaagtttgatataacgttggtaggctgtc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17281 ggacttgcaattgaaggctttgtgaaggctggaagtttgatataacgttggtaggctgtc 17222
Query: 747 ggtagaatagttatatcgtagtatattgtattcatgaagcagttatcgatctctggatgt 806
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 17221 ggtagaatagttatatcgtagtatattgtattcatgaggcagttatcgatctctggatgt 17162
Query: 807 tagtacatctggttttattttacaattcattatgaccgcatatcgnctt-atcctccgta 865
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 17161 tagtacatctgg-tttattttacaattcattatgaccgcatatcgtcttaatcctccgta 17103
Query: 866 tatt-atgtgtatattcaaaatcacgtgacctatatgtaacgttacccgggttattatga 924
|||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||
Sbjct: 17102 tattaatgtgtatattcaaaatcacgtgacatatatgt-acgttacccggattataatga 17044
Query: 925 c 925
|
Sbjct: 17043 c 17043
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,179
Number of Sequences: 1807
Number of extensions: 15179
Number of successful extensions: 332
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)