BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC02RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1243 1322 0.0
>3x_Contig1243
Length = 5571
Score = 1322 bits (667), Expect = 0.0
Identities = 815/850 (95%), Gaps = 11/850 (1%)
Strand = Plus / Minus
Query: 44 gctttggattacaaaaaaaataatat-cacagaatgcgaaagacaaacaaattaatttca 102
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2134 gctttggattacaaaaaaaataaaatacacagaatgcgaaagacaaacaaattaatttca 2075
Query: 103 acagagaaatcgaatctgctgaaggttggctgttaaagtaattttaaaactgggtaagtc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 acagagaaatcgaatctgctgaaggttggctgttaaagtaattttaaaactgggtaagtc 2015
Query: 163 atcgacgatataactgattggtcgttaagattttgcattactacctaatatcataacaaa 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 atcgacgatataactgattggtcgttaagattttgcattactacctaatatcataacaaa 1955
Query: 223 ggctgcaaatttgtcaaagatctacactgaaatcaggggaaacgaattaatcgttgtgta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 ggctgcaaatttgtcaaagatctacactgaaatcaggggaaacgaattaatcgttgtgta 1895
Query: 283 aaataaggcacgtagtgtaacgatcaagacttaacaaaagtgtctaaaggtaacaattgt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 aaataaggcacgtagtgtaacgatcaagacttaacaaaagtgtctaaaggtaacaattgt 1835
Query: 343 gatactttgatacaaatttatcgatgtcaaatctgcctattataaatttcatcaatttca 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 gatactttgatacaaatttatcgatgtcaaatctgcctattataaatttcatcaatttca 1775
Query: 403 accagaatggttcgtgcatatcaatgggcacatcccaggggtttaaaatcttcaattgcg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 accagaatggttcgtgcatatcaatgggcacatcccaggggtttaaaatcttcaattgcg 1715
Query: 463 aaccgtttggcaggttttatcaagacgaagaatggggatgcgggatagtagagatgttat 522
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1714 aaccgtttggcaggttttatcaagacgaagaagggggatgcgggatagtagagatgttat 1655
Query: 523 tttccacttcgcttttagcagtggttggaatgggagacaatccagcgatgtctcc-agaa 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1654 tttccacttcgcttttagcagtggttggaatgggagacaatccagcgatgtctccaagaa 1595
Query: 582 gattacgtatgttgaacacgaagcgtcattctgtgatatgtgaggtaacgttttc-acaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 1594 gattacgtatgttgaacacgaagcgtcattctgtgatatgtgaggtaacgtttccaacaa 1535
Query: 641 ctatattgtcagtgaaaatgatcaaatctcgcctcgcagtgcttcttcnagagcaaatct 700
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 1534 ctatattgtcagtgaaaatgaacaaatctcgcctcgcagtgcttcttcaggagcaaatct 1475
Query: 701 acatctatgattatcagt-acatgagacttcttaacaccatcgaaacatcaatgaatgct 759
|||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1474 acatctatga-tatcagtaacatgagacttcttcacaccatcgaaacatcaatgaatgct 1416
Query: 760 cagggaatattgtcgatgtta-caaatttccag-attattaccttgtggtatcattctcc 817
|||||||| ||||||||| | |||||| | || || |||||||||| ||||| |||||
Sbjct: 1415 cagggaattatgtcgatgtcaccaaattccgagaataattaccttgt-gtatccatctcc 1357
Query: 818 -cccaaagtgattaatttcaaaatcaaaaaccctgccac-acgaataacatc-acatcca 874
|| ||||||||||||| | |||||| ||| ||| || |||||||||||| ||||| |
Sbjct: 1356 accaaaagtgattaattcagagatcaaagaccatgcaacaacgaataacatcaacatcaa 1297
Query: 875 aaaaactgac 884
||||||||||
Sbjct: 1296 aaaaactgac 1287
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8084
Number of Sequences: 1807
Number of extensions: 8084
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)