BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC03FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1429 0.0
>3x_Contig1758
Length = 25930
Score = 1429 bits (721), Expect = 0.0
Identities = 792/810 (97%), Gaps = 6/810 (0%)
Strand = Plus / Minus
Query: 86 caagcatggattacgatgatgaggatgttcagactaacgaccggacttccacatctatca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3619 caagcatggattacgatgatgaggatgttcagactaacgaccggacttccacatctatca 3560
Query: 146 ctgattcctatggtaaccgtgatgaaagtgattcgtacgatgacgacgataccgatgaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3559 ctgattcctatggtaaccgtgatgaaagtgattcgtacgatgacgacgataccgatgaca 3500
Query: 206 taaatccagatgatatgacaagtagctctgaggaaagcacaaatagcgtgtctgacgagg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3499 taaatccagatgatatgacaagtagctctgaggaaagcacaaatagcgtgtctgacgagg 3440
Query: 266 caagaccctcaggactttccaaaagttcaaattctcaaagctcagcacagttgggtcctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3439 caagaccctcaggactttccaaaagttcaaattctcaaagctcagcacagttgggtcctt 3380
Query: 326 cgaaacatgagccgactactcccgactacacgccaaaagaaaatgaacgagaaatggggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3379 cgaaacatgagccgactactcccgactacacgccaaaagaaaatgaacgagaaatggggg 3320
Query: 386 agaccattttgaacgcccctcttggtacagtgataaatatactctatggctcagatgtcc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3319 agaccattttgaacgcccctcttggtacagtgataaatatactctatggctcagatgtcc 3260
Query: 446 aatactttgatcgaatattaaaagctcaaggcaactatgatatctccaaatttaatgaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3259 aatactttgatcgaatattaaaagctcaaggcaactatgatatctccaaatttaatgaaa 3200
Query: 506 taatccaatccaaaaaaagagaatacgtgtacactaaaccaatttccggtagtataggtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3199 taatccaatccaaaaaaagagaatacgtgtacactaaaccaatttccggtagtataggtc 3140
Query: 566 caagtaaaactcgctgtgagattactgaatcaatcgacaagttagatctcaaaaattacg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3139 caagtaaaactcgctgtgagattactgaatcaatcgacaagttagatctcaaaaattacg 3080
Query: 626 tgcaggtcacacaagtctcgaaaactcccgatataccttcgggtaattccttcgttgtta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3079 tgcaggtcacacaagtctcgaaaactcccgatataccttcgggtaattccttcgttgtta 3020
Query: 686 aaacaatattcttattctgttgggctgatgacaattcaaccaaagtgaaagtgtatactt 745
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3019 aaacaatattcttattctgttgggctgatgacaattcaaccaaggtgaaagtgtatactt 2960
Query: 746 acgtggactggtctgctaagatttggatcanagcggctgttgaataggaaccctttgacg 805
||||||||||||||||||||| |||||||| ||||||||||||| ||| | |||||||||
Sbjct: 2959 acgtggactggtctgctaagagttggatcaaagcggctgttgaaaagggaacctttgacg 2900
Query: 806 ta--tatatcttctacg-aaattcttttcgaggaac-tgnagacatcatcgagg-aaaca 860
| | |||||||||| |||||||||||||||||| || |||||||||||||| |||||
Sbjct: 2899 gaataaaatcttctacgaaaattcttttcgaggaacttgaagacatcatcgaggaaaaca 2840
Query: 861 taggtatga-cagctccccagataacagaa 889
||||| || ||||||||||||||||||||
Sbjct: 2839 aaggtaagagcagctccccagataacagaa 2810
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5724
Number of Sequences: 1807
Number of extensions: 5724
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)