BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC36ZC03RM1.SCF screened BAC_end (930 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig787 1249 0.0 >3x_Contig787 Length = 1880 Score = 1249 bits (630), Expect = 0.0 Identities = 719/741 (97%), Gaps = 6/741 (0%) Strand = Plus / Minus Query: 53 cttattagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcg 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 cttattagtcgaagttaaaccatacttagtcattcttcgtcgtaatcatcataatcatcg 766 Query: 113 taaaagcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggt 172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 765 taaaagcatcatttcaaatgttgtggaatattaattgtgaaatggggagaggggatgggt 706 Query: 173 agtcaaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgattttagg 232 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 705 agtcaaataataaaggttttaaaaggaaacaaaaattaaagtttttcgtatgagtttagg 646 Query: 233 ggagggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtg 292 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 645 ggagggatggtacatcttgtttgtttgtctctatctcactctataaagtgcacatgagtg 586 Query: 293 tgggtgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgt 352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 tgggtgtagtcatttaatttaatgttttccttttttcctttttataatgctatggtgcgt 526 Query: 353 gtgtgggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaacc 412 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 gtgtgggcatgaaattgtataaaggtttagtttctgttaatcattaatcaaactgaaacc 466 Query: 413 ttttccaattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcata 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 465 ttttccaattgatcatcacttggcttagaagaaatagaattggccgtggaacctgtcata 406 Query: 473 tcagcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggat 532 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 405 gcagcaacttcttccgtttggtcaactctttcgatataagatttcaaatgaggagaggat 346 Query: 533 aaatctctgtggatcttctcgtgaccgacatataccaagacataagtgaagatgacactg 592 ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 345 aaatctctgtggaacttctcgtgaccgacaaataccaagacaaaagtgaagatgacactg 286 Query: 593 gaaccagtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggag 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 285 gaaccagtcaagatagccataactttagagtaatccttgtttgttacttcacctgcggag 226 Query: 653 ttccattcgattgggtacaaat-anccaaatcgttttcgattacgaccgaatcggcagaa 711 |||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||| Sbjct: 225 ttccattcgattgggtacaaatcagccaaatcgttttcgataacgaccgaagcggcagaa 166 Query: 712 gcc-agtttactaatgattaggc-agaccaaaga-caaagctctagcttttgga-gagat 767 ||| |||| ||||| ||||| |||||| ||| |||||||||||||| |||| ||||| Sbjct: 165 gccaagttacctaattgataggcaagaccagagaccaaagctctagcttctggaggagat 106 Query: 768 atttcgg-aagatggattgga 787 | ||||| ||||||||||||| Sbjct: 105 aattcggaaagatggattgga 85 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7308 Number of Sequences: 1807 Number of extensions: 7308 Number of successful extensions: 61 Number of sequences better than 1.0e-20: 1 length of query: 930 length of database: 10,358,551 effective HSP length: 16 effective length of query: 914 effective length of database: 10,329,639 effective search space: 9441290046 effective search space used: 9441290046 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)