BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZC04RM1.SCF screened BAC_end
         (976 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig789                                                          821   0.0  

>3x_Contig789 
          Length = 3508

 Score =  821 bits (414), Expect = 0.0
 Identities = 492/514 (95%), Gaps = 3/514 (0%)
 Strand = Plus / Plus

                                                                        
Query: 52   ctctcttattatgactatgtcatcagttgtagatcctctttcggtacttgggcctattga 111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  ctctcttattatgactatgtcatcagttgtagatcctctttcggtacttgggcctattga 937

                                                                        
Query: 112  tttcctgttttccaaaattaaagccttaatcctttctgtaagccttacaatgttgttatt 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938  tttcctgttttccaaaattaaagccttaatcctttctgtaagccttacaatgttgttatt 997

                                                                        
Query: 172  actactgtttgtactggcattgctgctgtggctgttatctcttgaaatatttttgagctg 231
            ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||
Sbjct: 998  actactgtttgtactggcattgctgctgtggctgttatctcttgaaagaagtttgagctg 1057

                                                                        
Query: 232  attttccctttccttttgcatctcaatcggtacatgatattctccgttgaataaattttt 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 attttccctttccttttgcatctcaatcggtacatgatattctccgttgaataaattttt 1117

                                                                        
Query: 292  taaatatgatacttcatcggacggtttagcaattaatgcagtggactgctgttgctggtt 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 taaatatgatacttcatcggacggtttagcaattaatgcagtggactgctgttgctggtt 1177

                                                                        
Query: 352  cttatgcttgagttttctatagagtctagttccatattgtactcttgtaggtgaagattc 411
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1178 cttatgcttgagttttctatagagtctagttccatattgtactcttgtaggtgaggattc 1237

                                                                        
Query: 412  tgtatagttttctttattagtattatcccaattggaaagatccttaagtaactt-aacac 470
            |||||||||||||| ||||||||||||||||| | || |||||||| ||||||| |||||
Sbjct: 1238 tgtatagttttcttcattagtattatcccaatggaaaggatccttaggtaacttcaacac 1297

                                                                        
Query: 471  ttttttcgttggagtaattgattgttg-aactgttcctttaaatgctcctt-ttttggac 528
            || |||||||||||||||||| ||||| ||||||||| ||||||||||||| | ||||| 
Sbjct: 1298 ttctttcgttggagtaattgaatgttgtaactgttcccttaaatgctccttctcttggag 1357

                                              
Query: 529  catggagtctaaatgaatttttttttttggagtc 562
            ||  ||||||||||||||||| ||| | ||||||
Sbjct: 1358 cagtgagtctaaatgaattttctttctcggagtc 1391


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,803
Number of Sequences: 1807
Number of extensions: 29803
Number of successful extensions: 229
Number of sequences better than 1.0e-20: 1
length of query: 976
length of database: 10,358,551
effective HSP length: 16
effective length of query: 960
effective length of database: 10,329,639
effective search space: 9916453440
effective search space used: 9916453440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)