BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC36ZC04RM1.SCF screened BAC_end (976 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig789 821 0.0 >3x_Contig789 Length = 3508 Score = 821 bits (414), Expect = 0.0 Identities = 492/514 (95%), Gaps = 3/514 (0%) Strand = Plus / Plus Query: 52 ctctcttattatgactatgtcatcagttgtagatcctctttcggtacttgggcctattga 111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 878 ctctcttattatgactatgtcatcagttgtagatcctctttcggtacttgggcctattga 937 Query: 112 tttcctgttttccaaaattaaagccttaatcctttctgtaagccttacaatgttgttatt 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 938 tttcctgttttccaaaattaaagccttaatcctttctgtaagccttacaatgttgttatt 997 Query: 172 actactgtttgtactggcattgctgctgtggctgttatctcttgaaatatttttgagctg 231 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct: 998 actactgtttgtactggcattgctgctgtggctgttatctcttgaaagaagtttgagctg 1057 Query: 232 attttccctttccttttgcatctcaatcggtacatgatattctccgttgaataaattttt 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1058 attttccctttccttttgcatctcaatcggtacatgatattctccgttgaataaattttt 1117 Query: 292 taaatatgatacttcatcggacggtttagcaattaatgcagtggactgctgttgctggtt 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1118 taaatatgatacttcatcggacggtttagcaattaatgcagtggactgctgttgctggtt 1177 Query: 352 cttatgcttgagttttctatagagtctagttccatattgtactcttgtaggtgaagattc 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1178 cttatgcttgagttttctatagagtctagttccatattgtactcttgtaggtgaggattc 1237 Query: 412 tgtatagttttctttattagtattatcccaattggaaagatccttaagtaactt-aacac 470 |||||||||||||| ||||||||||||||||| | || |||||||| ||||||| ||||| Sbjct: 1238 tgtatagttttcttcattagtattatcccaatggaaaggatccttaggtaacttcaacac 1297 Query: 471 ttttttcgttggagtaattgattgttg-aactgttcctttaaatgctcctt-ttttggac 528 || |||||||||||||||||| ||||| ||||||||| ||||||||||||| | ||||| Sbjct: 1298 ttctttcgttggagtaattgaatgttgtaactgttcccttaaatgctccttctcttggag 1357 Query: 529 catggagtctaaatgaatttttttttttggagtc 562 || ||||||||||||||||| ||| | |||||| Sbjct: 1358 cagtgagtctaaatgaattttctttctcggagtc 1391 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 29,803 Number of Sequences: 1807 Number of extensions: 29803 Number of successful extensions: 229 Number of sequences better than 1.0e-20: 1 length of query: 976 length of database: 10,358,551 effective HSP length: 16 effective length of query: 960 effective length of database: 10,329,639 effective search space: 9916453440 effective search space used: 9916453440 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)