BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC05FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1464 1328 0.0
>3x_Contig1464
Length = 11693
Score = 1328 bits (670), Expect = 0.0
Identities = 732/745 (98%), Gaps = 6/745 (0%)
Strand = Plus / Minus
Query: 86 atagattcttcaatgttttgaatttcccaatttggtcaaaatgtaaatacatagaacatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4721 atagattcttcaatgttttgaatttcccaatttggtcaaaatgtaaatacatagaacatc 4662
Query: 146 gatcaaaactggaaaaccgaacaaaagcagagtagtagaattaccttcaacaactctctg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4661 gatcaaaactggaaaaccgaacaaaagcagagtagtagaattaccttcaacaactctctg 4602
Query: 206 ttgaatgccctttatccatcataaccagcgccacaaacatcgatgacaagatgcaaacaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4601 ttgaatgccctttatccatcataaccagcgccacaaacatcgatgacaagatgcaaacaa 4542
Query: 266 cacctgtatcggaagtaccagaccctactgactgtttaagattgacaccggttaacttga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4541 cacctgtatcggaagtaccagaccctactgactgtttaagattgacaccggttaacttga 4482
Query: 326 aaactttaagatcacctctaaagcaaggtcagatgaatattgagacaaatgacagcttat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4481 aaactttaagatcacctctaaagcaaggtcagatgaatattgagacaaatgacagcttat 4422
Query: 386 acaaagaaaactttaatcttatatcccgacaactacaaaacctattgagtgaacttgatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4421 acaaagaaaactttaatcttatatcccgacaactacaaaacctattgagtgaacttgatg 4362
Query: 446 tgatatatcgagaggttggatactcgaatatagagatatcaaggaaggagaaacagattt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4361 tgatatatcgagaggttggatactcgaatatagagatatcaaggaaggagaaacagattt 4302
Query: 506 tccacaatctatcaaattcgatttcgaagttcttcgatgaggctaatgcggaacgagata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4301 tccacaatctatcaaattcgatttcgaagttcttcgatgaggctaatgcggaacgagata 4242
Query: 566 tgcttacaaaagaatatcaggttggtcaacatagcctacagtgtatgcttaatgccatca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4241 tgcttacaaaagaatatcaggttggtcaacatagcctacagtgtatgcttaatgccatca 4182
Query: 626 atgatcccgaaggagtatatacgatacccgatctgtttatgagaaacagtgtactggaga 685
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 atgatccgaaaggagtatatacgatacccgatctgtttatgagaaacagtgtactggaga 4122
Query: 686 catctgctcaagcaattatagatgacaactgttcaagttcctcaaag-acatcagcctna 744
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct: 4121 catctgctcaagcaattatagatgacaactgttcaag-tcctcaaagaacatcagcctca 4063
Query: 745 ctactttacaaattg-aaacgctcaataatgtgaaagttttttgttatggaccgcttatt 803
|||||| |||||||| ||||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 4062 ctacttaacaaattgaaaacgctcaataatgtgaaag-tttttgttat-gaacgcttatt 4005
Query: 804 taactaagtttaagggatcatttat 828
|| |||||||| | |||||||||||
Sbjct: 4004 tacctaagttt-atggatcatttat 3981
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6875
Number of Sequences: 1807
Number of extensions: 6875
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)