BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC05RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 1362 0.0
>3x_Contig1321
Length = 8217
Score = 1362 bits (687), Expect = 0.0
Identities = 795/817 (97%), Gaps = 11/817 (1%)
Strand = Plus / Minus
Query: 45 gcttgaattaaatgacaataacttaacaagtttacctgcggaaatcaagtactcaaaaaa 104
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7666 gcttgaattaaatgacaataacttaacaagttgtactgcggaaatcaagtactcaaaaaa 7607
Query: 105 actaattcatttttctgccgccaacaacaagttggatagtattccggaagaaataggaga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 actaattcatttttctgccgccaacaacaagttggatagtattccggaagaaataggaga 7547
Query: 165 actctccaatcttaaatcacttgatttacattgtaataatattagagaattacccatttc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7546 actctccaatcttaaatcacttgatttacattgtaataatattagagaattacccatttc 7487
Query: 225 aattgtaaatttagagctaacaacattaaatttctcctctaatttacttggctacaaccc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7486 aattgtaaatttagagctaacaacattaaatttctcctctaatttacttggctacaaccc 7427
Query: 285 cggattagaggactatgaaaatacccctttatcaaaatcattactatttctcaatactgc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7426 cggattagaggactatgaaaatacccctttatcaaaatcattactatttctcaatactgc 7367
Query: 345 tgacaacaatctcaataatgagatgcttcctttattcaacttcaacactagcttgaagat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7366 tgacaacaatctcaataatgagatgcttcctttattcaacttcaacactagcttgaagat 7307
Query: 405 aatcaatctttcttataatgatatttctgatatttctgcattaaacctaccatcgttgac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306 aatcaatctttcttataatgatatttctgatatttctgcattaaacctaccatcgttgac 7247
Query: 465 agagttgtatctatccggcaatgctatcaccagcttgcccggtgaagtgttccanagaat 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7246 agagttgtatctatccggcaatgctatcaccagcttgcccggtgaagtgttccaaagaat 7187
Query: 525 gaagaatttgaaggtgataatgttaaatggtaataagctgatgtcactaccatcggagct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7186 gaagaatttgaaggtgataatgttaaatggtaataagctgatgtcactaccatcggagct 7127
Query: 585 ctctc-actttcgaatttgacangtctagatgttggttcaaatcaa-taaaatacaatat 642
||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 7126 ctctcaactttcgaatttgacagttctagatgttggttcaaatcaattaaaatacaatat 7067
Query: 643 ctcaaactaccattatgattggaactggatgaataatttgaacctaaaat-tttgaaact 701
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 7066 ctcaaactaccattatgattggaactggatgaataatttgaacctaaaatatttgaactt 7007
Query: 702 ttctggg-ataaaaagttcgaaataaagtcaatgattggccctgatact-aaacagattt 759
||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 7006 ttctgggaataaaaggttcgaaataaagtcaatgattggccctgatactaaaacagattt 6947
Query: 760 gtccgacttgacaatctt-aaacagtt-aaaattttgggggtgatggatg-tacaatg-a 815
|||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||| |
Sbjct: 6946 gtccgacttgacaatcttaaaacagttaaaaattttggggttgatggatgttacaatgaa 6887
Query: 816 aaactccaa-gttcctgac-aaggtgtcaactttcgt 850
||||||||| ||||||||| | |||||||||||||||
Sbjct: 6886 aaactccaaggttcctgacgatggtgtcaactttcgt 6850
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7777
Number of Sequences: 1807
Number of extensions: 7777
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)